We analyzed non-additive effects in resonance assisted hydrogen bonds (RAHBs) in different β-enolones, which are archetypal compounds of these types of interactions. For this purpose, we used (i) potential energy curves to compute the formation energy, ΔE, of the RAHBs of interest in different circumstances along with (ii) tools offered by quantum chemical topology, namely, the Quantum Theory of Atoms In Molecules (QTAIM) and the Interacting Quantum Atoms (IQA) electronic energy partition. We established the effect that a given H-bond exerts over ΔE associated with another RAHB, determining in this way the cooperativity or the anticooperativity of these interactions. The mesomeric structures and the QTAIM delocalisation indices are consistent with the determined cooperative or anticooperative character of two given RAHBs. The HB cooperativity and anticooperativity studied herein are directly reflected in the IQA interaction energy E, but they are modulated by the surrounding hydrocarbon chain. The IQA decomposition of ΔE, a measure of the cooperativity between a pair of interacting RAHBs, indicates that the analyzed H-bond cooperative/anticooperative effects are associated with greater/smaller (i) strengthening of the pseudo-bicyclic structure of the compounds of interest and (ii) electron localisations with its corresponding changes in the intra and intermolecular exchange-correlation contributions to ΔE. Overall, we expect that this investigation will provide valuable insights into the interplay among hydrogen bonded atoms and the π system in RAHBs contributing in this way to the understanding of the general features of H-bonds.
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Biochem Biophys Res Commun
December 2024
Department of Chemistry, North Carolina State University, Raleigh, NC, 27695, USA. Electronic address:
Hemoglobin and myoglobin are known to undergo autoxidation, in which the oxyferrous form of the heme is oxidized to the ferric state by O. Dehaloperoxidase-A (DHP-A), a multifunctional catalytic hemoglobin from Amphitrite ornata is an exception and is observed to undergo the reverse process, during which the ferric heme is spontaneously reduced to the oxyferrous form under aerobic conditions. The high reduction potential of DHP (+202 mV at pH 7.
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January 2025
Department of Chemistry, North Carolina State University, Raleigh, NC 27695, United States of America. Electronic address:
At least two of the six methionine (Met) residues in dehaloperoxidase (DHP) are shown to act as electron donors in both autoreduction and protein-heme crosslinking. Autoreduction observed in the two isozymes, DHP-A and DHP-B, is explained by the high heme reduction potential and an endogenous source of electrons from methionine (Met) or cysteine (Cys). This study provides evidence of a connection to protein-heme crosslinking that occurs when DHP is activated by HO in competition with substrate oxidation and autoreduction.
View Article and Find Full Text PDFAngew Chem Int Ed Engl
September 2024
Department of Chemistry, Universitat de les Illes Balears, Cra. Valldemossa, Km. 7.5, 07122, Palma de Mallorca, Spain.
We designed a new cyanine dye 1, with two pedant rod-like groups, capable of forming two distinct two-dimensional (2D) supramolecular polymorphs in methylcyclohexane; an H-type aggregate (Agg-H) and a J-type aggregate (Agg-J). Importantly, these two polymorphs were not accessed through polymerization events, and instead through the thermal transformation of a third particle-like polymorph (Agg-H) formed by the anti-cooperative assembly of 1. While Agg-H is generated upon cooling the solution of Agg-H by a thermoreversible polymorph transition, the Agg-J was obtained through a hidden pathway by combining sonication and cooling to the Agg-H solution.
View Article and Find Full Text PDFPhys Chem Chem Phys
June 2024
Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong 518055, People's Republic of China.
In this paper, we combine an energy decomposition analysis (EDA) scheme with many-body expansion (MBE) to develop a MB-EDA method to study the cooperative and anti-cooperative effects in molecular cluster systems. Based on the target state optimization self-consistent field (TSO-SCF) method, the intermolecular interaction energy can be decomposed into five chemically meaningful terms, , electrostatic, exchange, polarization, charge transfer and dispersion interaction energies. MB-EDA can decompose each of these terms in MBE.
View Article and Find Full Text PDFChem Sci
June 2024
Department of Organic and Polymer Chemistry, Hunan Key Laboratory of Micro & Nano Materials Interface Science, College of Chemistry and Chemical Engineering, Central South University Changsha Hunan-410083 China.
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