COMPARISON OF 16S rRNA-PCR-RFLP, LipL32-PCR AND OmpL1-PCR METHODS IN THE DIAGNOSIS OF LEPTOSPIROSIS.

Rev Inst Med Trop Sao Paulo

Cukurova University, Medical Faculty, Department of Microbiology. 01330 Adana, Turkey. E-mails:

Published: September 2016

Leptospirosis is still one of the most important health problems in developing countries located in humid tropical and subtropical regions. Human infections are generally caused by exposure to water, soil or food contaminated with the urine of infected wild and domestic animals such as rodents and dogs. The clinical course of leptospirosis is variable and may be difficult to distinguish from many other infectious diseases. The dark-field microscopy (DFM), serology and nucleic acid amplification techniques are used to diagnose leptospirosis, however, a distinctive standard reference method is still lacking. Therefore, in this study, we aimed to determine the presence of Leptospira spp., to differentiate the pathogenic L. interrogans and the non-pathogenic L. biflexa, and also to determine the sensitivity and specificity values of molecular methods as an alternative to conventional ones. A total of 133 serum samples, from 47 humans and 86 cattle were evaluated by two conventional tests: the Microagglutination Test (MAT) and the DFM, as well as three molecular methods, the 16S rRNA-PCR followed by Restriction Fragment Lenght Polymorphism (RFLP) of the amplification products 16S rRNA-PCR-RFLP, LipL32-PCR and OmpL1-PCR. In this study, for L. interrogans, the specificity and sensitivity rates of the 16S rRNA-PCR and the LipL32-PCR were considered similar (100% versus 98.25% and 100% versus 98.68%, respectively). The OmpL1-PCR was able to classify L. interrogans into two intergroups, but this PCR was less sensitive (87.01%) than the other two PCR methods. The 16S rRNA-PCR-RFLP could detect L. biflexa DNA, but LipL32-PCR and OmpL1-PCR could not. The 16S rRNA-PCR-RFLP provided an early and accurate diagnosis and was able to distinguish pathogenic and non-pathogenic Leptospira species, hence it may be used as an alternative method to the conventional gold standard techniques for the rapid disgnosis of leptospirosis.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5048635PMC
http://dx.doi.org/10.1590/S1678-9946201658064DOI Listing

Publication Analysis

Top Keywords

16s rrna-pcr-rflp
16
lipl32-pcr ompl1-pcr
12
rrna-pcr-rflp lipl32-pcr
8
molecular methods
8
methods 16s
8
16s rrna-pcr
8
100% versus
8
leptospirosis
5
16s
5
comparison 16s
4

Similar Publications

Article Synopsis
  • Capnocytophaga canimorsus, a bacterium found in dogs' mouths, can cause serious infections in humans, primarily through dog bites.
  • Traditional methods to identify these bacteria can be inaccurate due to their genetic similarities, leading to misidentification in laboratory tests.
  • A new, improved PCR method was developed and validated, showing a 100% accuracy for identifying C. canimorsus from human patients and an overall accuracy of 84%, making it a valuable tool for diagnosing infections and studying zoonotic diseases.
View Article and Find Full Text PDF

Molecular typing and diagnosis of Anaplasma spp. closely related to Anaplasma phagocytophilum in ruminants from Tunisia.

Ticks Tick Borne Dis

March 2017

Laboratoire de Microbiologie, Ecole Nationale de Médecine Vétérinaire, Institution de la Recherche et de l'Enseignement Supérieur Agricoles, Université de La Manouba, Sidi Thabet, Tunisia. Electronic address:

Accurate diagnosis of animal and zoonotic diseases, such as granulocytic anaplasmosis, is crucial to estimate risk during control programs. In this study, 16S rRNA nested PCR and RFLP assay were combined to investigate the presence of Anaplasma phagocytophilum and genetically related strains (namely A. phagocytophilum-like 1 and 2) in 936 Tunisian ruminants.

View Article and Find Full Text PDF

Leptospirosis is still one of the most important health problems in developing countries located in humid tropical and subtropical regions. Human infections are generally caused by exposure to water, soil or food contaminated with the urine of infected wild and domestic animals such as rodents and dogs. The clinical course of leptospirosis is variable and may be difficult to distinguish from many other infectious diseases.

View Article and Find Full Text PDF

Legume, with a strong resistance to the adverse environmental conditions, is one of pioneer plants in the desert region and plays an important role in the protection of the ecological environment. In this study, the symbiosis of rhizobia associating with shrubby and herbaceous legumes in Shenmu area, Shaanxi, China was characterized by the 16S rRNA PCR-RFLP and sequence analysis of involved genes. A total of 55 strains were isolated and purified, including 30 strains from the shrubby legume Amorpha fruticosa and Caragana microphylla, and 25 strains from herbaceous plants Astragalus adsurgens, Medicago sativa and Astragalus melilotoides.

View Article and Find Full Text PDF

A collection of 104 isolates from root-nodules of Vicia faba was submitted to 16S rRNA PCR-RFLP typing. A representative sample was further submitted to sequence analysis of 16S rRNA. Isolates were assigned to 12 genera.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!