The Biology and Disease-driven Human Proteome Project (B/D-HPP) is aimed at supporting and enhancing the broad use of state-of-the-art proteomic methods to characterize and quantify proteins for in-depth understanding of the molecular mechanisms of biological processes and human disease. Based on a foundation of the pre-existing HUPO initiatives begun in 2002, the B/D-HPP is designed to provide standardized methods and resources for mass spectrometry and specific protein affinity reagents and facilitate accessibility of these resources to the broader life sciences research and clinical communities. Currently there are 22 B/D-HPP initiatives and 3 closely related HPP resource pillars. The B/D-HPP groups are working to define sets of protein targets that are highly relevant to each particular field to deliver relevant assays for the measurement of these selected targets and to disseminate and make publicly accessible the information and tools generated. Major developments are the 2016 publications of the Human SRM Atlas and of "popular protein sets" for six organ systems. Here we present the current activities and plans of the BD-HPP initiatives as highlighted in numerous B/D-HPP workshops at the 14th annual HUPO 2015 World Congress of Proteomics in Vancouver, Canada.
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http://dx.doi.org/10.1021/acs.jproteome.6b00444 | DOI Listing |
Biometrics
October 2024
Department of Epidemiology & Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY 10017, United States.
Cancer is a complex disease driven by genomic alterations, and tumor sequencing is becoming a mainstay of clinical care for cancer patients. The emergence of multi-institution sequencing data presents a powerful resource for learning real-world evidence to enhance precision oncology. GENIE BPC, led by American Association for Cancer Research, establishes a unique database linking genomic data with clinical information for patients treated at multiple cancer centers.
View Article and Find Full Text PDFAm J Physiol Lung Cell Mol Physiol
December 2024
Center for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, Blood, and Vascular Medicine Institute, Division of Cardiology, Department of Medicine, University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center, Pittsburgh, PA, USA.
Proc Biol Sci
December 2024
Department of Biology and Coastal and Marine Institute, San Diego State University, San Diego, CA 92182-4614, USA.
The potential for aquatic gastropods to display phenotypic plasticity in response to predator cues is well documented. However, long-term phenotypic responses to predator exposure are difficult to evaluate at large scales in the field. Thus, the extent to which comparatively dilute predator cues experienced by natural snail populations influence morphometric development and whether energetic costs associated with defensive morphology have allometric impacts on other life-history characteristics is unclear.
View Article and Find Full Text PDFCurr Opin Immunol
December 2024
Division of Immunology and Molecular Medicine, Department of Molecular and Cell Biology, Howard Hughes Medical Institute, University of California, Berkeley, CA USA. Electronic address:
Tuberculosis is caused by Mycobacterium tuberculosis, a bacterium that accounts for more human mortality than any other. Evidence is accumulating for the view that tuberculosis is an interferonopathy - a disease driven by type I interferons. However, how type I interferons exacerbate tuberculosis remains poorly understood.
View Article and Find Full Text PDFJ Proteome Res
December 2024
Institute for Systems Biology, Seattle, Washington 98109, United States.
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