It has recently been shown that 'sub-atomic' contrast can be observed during NC-AFM imaging of the Si(111)-7×7 substrate with a passivated tip, resulting in triangular shaped atoms [Sweetman et al. Nano Lett. 2014, 14, 2265]. The symmetry of the features, and the well-established nature of the dangling bond structure of the silicon adatom means that in this instance the contrast cannot arise from the orbital structure of the atoms, and it was suggested by simple symmetry arguments that the contrast could only arise from the backbonding symmetry of the surface adatoms. However, no modelling of the system has been performed in order to understand the precise origin of the contrast. In this paper we provide a detailed explanation for 'sub-atomic' contrast observed on Si(111)-7×7 using a simple model based on Lennard-Jones potentials, coupled with a flexible tip, as proposed by Hapala et al. [Phys. Rev. B 2014, 90, 085421] in the context of interpreting sub-molecular contrast. Our results show a striking similarity to experimental results, and demonstrate how 'sub-atomic' contrast can arise from a flexible tip exploring an asymmetric potential created due to the positioning of the surrounding surface atoms.
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http://dx.doi.org/10.3762/bjnano.7.85 | DOI Listing |
Acta Crystallogr D Struct Biol
December 2023
Structural Studies, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.
Hydrogen (H) atoms are abundant in macromolecules and often play critical roles in enzyme catalysis, ligand-recognition processes and protein-protein interactions. However, their direct visualization by diffraction techniques is challenging. Macromolecular X-ray crystallography affords the localization of only the most ordered H atoms at (sub-)atomic resolution (around 1.
View Article and Find Full Text PDFUltramicroscopy
September 2018
Physics Faculty, Regensburg University, Universitätsstrasse 31, Regensburg, FRG D-93040, Germany.
With the advent of probe corrected STEM machines it became possible to probe specimens on a scale of less than 50 pm resolution. This opens completely new horizons for research, as it is e.g.
View Article and Find Full Text PDFBeilstein J Nanotechnol
August 2016
The School of Physics and Astronomy, The University of Nottingham, Nottingham, NG7 2RD, United Kingdom.
It has recently been shown that 'sub-atomic' contrast can be observed during NC-AFM imaging of the Si(111)-7×7 substrate with a passivated tip, resulting in triangular shaped atoms [Sweetman et al. Nano Lett. 2014, 14, 2265].
View Article and Find Full Text PDFJ Pept Sci
February 2016
IMBB/FORTH, 70013, Iraklion Crete, Greece.
The synthetic peptide Z-(Aib)10-OH was crystallized from hot methanol by slow evaporation. The crystal used for data collection reflected synchrotron radiation to sub-atomic resolution, where the bonding electron density becomes visible between the non-hydrogen atoms. Crystals belong to the centrosymmetric space group P1.
View Article and Find Full Text PDFJ Neurol Sci
December 1978
Radiations other than those of the electromagnetic spectrum or of sound may be used for neurologic diagnosis. These consist of beams of sub-atomic particles, particularly of protons and other heavy ions. With these beams radiographs of unusually high contrast are obtained for the visualization and differentiation of the soft body tissues at very low doses (down to approximately two orders of magnitude less than with x-rays).
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