We present molecular dynamics simulation results describing proton/deuteron exchange equilibria along hydrogen bonds at the vicinity of HX acids (X = F, I) in aqueous clusters at low temperatures. To allow for an adequate description of proton transfer processes, our simulation scheme resorted on the implementation of a multistate empirical valence bond hamiltonian coupled to a path integral scheme to account for effects derived from nuclear quantum fluctuations. We focused attention on clusters comprising a number of water molecules close to the threshold values necessary to stabilize contact-ion-pairs. For X = F, our results reveal a clear propensity of the heavy isotope to lie at the bond bridging the halide to the nearest water molecule. Contrasting, for X = I, the thermodynamic stability is reversed and the former connectivity is preferentially articulated via the light isotope. These trends remain valid for undissociated and ionic descriptions of the stable valence bond states. The preferences are rationalized in terms of differences in the quantum kinetic energies of the isotopes which, in turn, reflect the extent of the local spatial confinements prevailing along the different hydrogen bonds in the clusters. In most cases, these features are also clearly reflected in the characteristics of the corresponding stretching bands of the simulated infrared spectra. This opens interesting possibilities to gauge the extent of the isotopic thermodynamic stabilizations and the strengths of the different hydrogen bonds by following the magnitudes and shifts of the spectral signals in temperature-controlled experiments, performed on mixed clusters combining H2O and HOD.
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http://dx.doi.org/10.1021/acs.jpca.6b06681 | DOI Listing |
Proc Natl Acad Sci U S A
February 2025
Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, ON M5S 3M2, Canada.
The ionizable lipid component of lipid nanoparticle (LNP) formulations is essential for mRNA delivery by facilitating endosomal escape. Conventionally, these lipids are synthesized through complex, multistep chemical processes that are both time-consuming and require significant engineering. Furthermore, the development of new ionizable lipids is hindered by a limited understanding of the structure-activity relationships essential for effective mRNA delivery.
View Article and Find Full Text PDFJ Phys Chem B
January 2025
Department of Chemical Engineering, School of Engineering, The University of Manchester, Oxford Road, Manchester M13 9PL, U.K.
In this article, we present three mesoscopic models for water. All three models make use of local density-dependent interaction potentials, as employed within the Pagonabarraga-Frenkel framework [Pagonabarraga, I.; Frenkel, D.
View Article and Find Full Text PDFHeliyon
January 2025
Division of Polymer Chemistry, Department of Chemistry, Atomic Energy Commission, P.O. Box: 6091, Damascus, Syrian Arab Republic.
The degree of sulfonation (DS) is a key property of sulfonated polymers, as it significantly influences their swelling behaviour, conductivity and mechanical properties. Accurately determining the DS is essential for optimizing these materials for various applications. In this work, the DS of sulfonated poly (ether ether ketone) (SPEEK) was evaluated using a combination of analytical techniques, including titration, back titration, Fourier Transform Infrared (FTIR), Ultra-Violet (UV) and proton nuclear magnetic resonance (H NMR) spectroscopies, Thermogravimetric analysis (TGA), Rutherford backscattering (RBS) and particle induced X-ray emission (PIXE) analysis.
View Article and Find Full Text PDFRSC Adv
January 2025
Univ. Grenoble Alpes, CNRS, CERMAV 38000 Grenoble France
Supramolecular oleogels, in which low-molecular weight oleogelators self-assemble into various nanostructures through non-covalent interactions, have witnessed increasing research activity in various fields of science, including food, cosmetics or remediation of marine oil spills. Herein, we report a simple scalable and environmentally friendly carbohydrate-based oleogelator, namely, the sodium salt of ,'-dimethyl β- glucosyl barbiturate (GlcBMe) that self-assembles through sonication to induce the gelation of polar organic solvent and later of non-polar vegetable oils by cationic exchange with quaternary ammonium surfactants. Water-soluble GlcBMe was capable of forming self-assembled fibrillar network bridging insoluble particles in the oil by sonication in the presence of a small amount of water.
View Article and Find Full Text PDFR Soc Open Sci
January 2025
WestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, UK.
Chronic myeloid leukaemia (CML) is primarily treated using imatinib mesylate, a tyrosine kinase inhibitor (TKI) targeting the BCR::ABL1 oncoprotein. However, the development of drug resistance and adverse side effects necessitate the exploration of alternative therapeutic agents. This study presents the synthesis and characterization of a novel imatinib analogue, 3-chloro--(2-methyl-5-((4-(pyridin-2-yl)pyrimidin-2-yl)amino)phenyl)benzamide (PAPP1).
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