We describe and illustrate a three-step data-processing approach that enables individual congener groups of chlorinated paraffins (CPs) to be resolved in mass spectra obtained from either of two soft ionization methods: electron capture negative ionization mass spectrometry (ECNI-MS) or atmospheric pressure chemical ionization mass spectrometry (APCI-MS). In the first step, general fragmentation pathways of CPs are deduced from analysis of mass spectra of individual CP congeners. In the second step, all possible fragment ions in the general fragmentation pathways of CPs with 10 to 20 carbon atoms are enumerated and compared to mass spectra of CP mixture standards, and a deconvolution algorithm is applied to identify fragment ions that are actually observed. In the third step, isotope permutations of the observed fragment ions are calculated and used to identify isobaric overlaps, so that mass intensities of individual CP congener groups can be deconvolved from the unresolved isobaric ion signal intensities in mass spectra. For a specific instrument, the three steps only need to be done once to enable deconvolution of CPs in unknown samples. This approach enables congener group-level resolution of CP mixtures in environmental samples, and it opens up the possibility for quantification of congener groups.
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http://dx.doi.org/10.1021/acs.analchem.6b01172 | DOI Listing |
Chemphyschem
January 2025
IISER Bhopal: Indian Institute of Science Education and Research Bhopal, Department of Chemistry, Bhopal Bypass Road, Bhauri, 462066, Bhopal, INDIA.
Aggregation-caused quenching (ACQ) reduces luminescence and compromises brightness in solid-state displays, necessitating strategies to mitigate its effects for enhanced performance. This study presents cost-effective method to mitigate ACQ of pyrene by co-assembling polycyclic aromatic hydrocarbons within low molecular weight gelator. Synthesized from readily available materials-cholesteryl chloroformate and pentaerythritol-in one-step reaction, gelator incorporates four cholesteryl units, reported to promote robust supramolecular gels in various solvents.
View Article and Find Full Text PDFJ Proteome Res
January 2025
Institute of Pharmacy and Molecular Biotechnology, Heidelberg University, 69120 Heidelberg, Germany.
The first step in bottom-up proteomics is the assignment of measured fragmentation mass spectra to peptide sequences, also known as peptide spectrum matches. In recent years novel algorithms have pushed the assignment to new heights; unfortunately, different algorithms come with different strengths and weaknesses and choosing the appropriate algorithm poses a challenge for the user. Here we introduce PeptideForest, a semisupervised machine learning approach that integrates the assignments of multiple algorithms to train a random forest classifier to alleviate that issue.
View Article and Find Full Text PDFAnal Chem
January 2025
Department of Analytical Chemistry, Faculty of Science, Palacký University Olomouc, 17. Listopadu 12, 77146 Olomouc, Czech Republic.
A novel remote deep ultraviolet laser ablation inlet connected to a dual electrospray ionization-atmospheric pressure chemical ionization (rDUVLAESCI) source is presented. This system allows for the simultaneous and spatial acquisition of mass spectrometry (MS) data for organic molecules with diverse polarities and molecular weights. Deep 193 nm UV laser ablation was used to sample analytes from dried spots for molecular MS analysis precisely.
View Article and Find Full Text PDFMacromol Rapid Commun
January 2025
CP2M, UMR 5128, CNRS, Universite Claude Bernard Lyon 1, Villeurbanne, 69616, France.
Within the context of polypropylene recycling by dissolution, the potential degradation of polypropylene in solution has been investigated using in situ NIR and Raman spectroscopy. Pure polypropylene, completely free of additives, and commercial polypropylene, low in additives, are degraded on purpose under different conditions. Genetic algorithm combined with partial least squares (GA-PLS) models have been built based on near-infrared (NIR) spectra, and partial least squares (PLS) models based on Raman spectra, to predict the mass average molar mass and the chain-scission rate, respectively, during the degradation process.
View Article and Find Full Text PDFJ Am Soc Mass Spectrom
January 2025
Department of Medicinal Chemistry, University of Washington, Seattle, Washington 98195, United States.
An inherent strength of hydrogen/deuterium exchange coupled to mass spectrometry (HDX-MS) is its ability to detect the presence of multiple conformational states of a protein, which often manifest as multimodal isotopic envelopes. However, the statistical considerations for accurate analysis of multimodal spectra have yet to be established. Here we outline an unrestrained binomial distribution fitting approach with the corresponding statistical tests to accurately detect and, when possible, deconvolute isotopic distributions that contain multiple subpopulations.
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