National user facilities such as the NIST Center for Neutron Research (NCNR) require a significant base of software to treat the data produced by their specialized measurement instruments. There is no universally accepted and used data treatment package for the reduction, visualization, and analysis of inelastic neutron scattering data. However, we believe that the software development approach adopted at the NCNR has some key characteristics that have resulted in a successful software package called DAVE (the Data Analysis and Visualization Environment). It is developed using a high level scientific programming language, and it has been widely adopted in the United States and abroad. In this paper we describe the development approach, elements of the DAVE software suite, its usage and impact, and future directions and opportunities for development.
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http://dx.doi.org/10.6028/jres.114.025 | DOI Listing |
J Clin Lab Anal
January 2025
Department of Research Analytics, Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, India.
Background: In the oral environment, the production of bacteriocins or antimicrobial peptides (AMPs) plays a crucial role in maintaining ecological balance by impeding the proliferation of closely related microorganisms. This study aims to conduct in silico genome screening of Streptococcus salivarius to identify potential antimicrobial compounds existing as hypothetical peptides, with the goal of developing novel synthetic antimicrobial peptides.
Methods: Draft genomes of various oral Streptococcus salivarius strains were obtained from the NCBI database and subjected to analysis using bioinformatic tools, viz.
Acta Crystallogr B Struct Sci Cryst Eng Mater
February 2025
Department of Chemistry, University College London (UCL), 20 Gordon Street, London, WC1H 0AJ, England.
The online software server SARAh-webRepresentational Analysis is introduced. It replaces the previous Windows-versions of SARAh-Representational analysis and SARAh-Refine, and related theory. The new suite of web apps carries out a range representational analysis calculations, including those based on the works of Kovalev, Bertaut, Izyumov, Bradley, Cracknell, Birman and Landau, for magnetic structures and electronic properties within frameworks based on the crystallographic space groups and point groups.
View Article and Find Full Text PDFDatabase (Oxford)
January 2025
Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, One Cyclotron Rd., Berkeley, CA 94720, United States.
Ontologies and knowledge graphs (KGs) are general-purpose computable representations of some domain, such as human anatomy, and are frequently a crucial part of modern information systems. Most of these structures change over time, incorporating new knowledge or information that was previously missing. Managing these changes is a challenge, both in terms of communicating changes to users and providing mechanisms to make it easier for multiple stakeholders to contribute.
View Article and Find Full Text PDFDiscov Oncol
January 2025
Department of Oncology, Fuyang Hospital of Anhui Medical University, Fuyang, 236000, China.
Background: Centromere protein N (CENPN), located on chromosome 16q23.2, encodes vital nucleosome-associated complexes that are essential for dynamic assembly processes. CENPN plays a pivotal role in regulating cell proliferation and cell cycle progression by influencing mitotic events.
View Article and Find Full Text PDFSci Total Environ
January 2025
Department of Urban Architecture and Waterscape, Faculty of Architecture, Gdańsk University of Technology, Gdańsk, Poland.
Nature-based Solutions (NbS) have emerged as a sustainable approach to managing flood risks by enhancing natural water retention and reducing surface runoff in urban areas. As climate change and rapid urbanization exacerbate flood hazards, optimizing the spatial deployment of NbS is crucial for improving urban resilience and mitigating flood impacts. This study presents a comprehensive optimization framework for the spatial allocation of fourteen different NbS types aimed at mitigating urban flood risks in Gdańsk, Poland.
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