This paper introduces a new approach-the Principal Component Gradient Analysis (PCGA)-to detect ecological gradients in time-series populations, i.e. several time-series originating from different individuals of a population. Detection of ecological gradients is of particular importance when dealing with time-series from heterogeneous populations which express differing trends. PCGA makes use of polar coordinates of loadings from the first two axes obtained by principal component analysis (PCA) to define groups of similar trends. Based on the mean inter-series correlation (rbar) the gain of increasing a common underlying signal by PCGA groups is quantified using Monte Carlo Simulations. In terms of validation PCGA is compared to three other existing approaches. Focusing on dendrochronological examples, PCGA is shown to correctly determine population gradients and in particular cases to be advantageous over other considered methods. Furthermore, PCGA groups in each example allowed for enhancing the strength of a common underlying signal and comparably well as hierarchical cluster analysis. Our results indicate that PCGA potentially allows for a better understanding of mechanisms causing time-series population gradients as well as objectively enhancing the performance of climate transfer functions in dendroclimatology. While our examples highlight the relevance of PCGA to the field of dendrochronology, we believe that also other disciplines working with data of comparable structure may benefit from PCGA.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965043 | PMC |
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158346 | PLOS |
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Department of Biology, College of Science, King Khalid University, Abha, 61413, Saudi Arabia.
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Department of Civil and Environmental Engineering, Dongguk University-Seoul, Seoul 04620, South Korea. Electronic address:
Even at trace concentrations, micropollutants, including pesticides and pharmaceuticals, pose considerable ecological risks, and the increasing presence of synthetic chemical substances in aquatic systems has emerged as a growing concern. Moreover, limited machine-learning (ML) approaches exist for analyzing environmental data, and the increasing complexity of ML models has made it challenging to understand predictor-outcome relationships. In particular, understanding complex interactions among multiple variables remains challenging.
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December 2024
School of Design, Shanghai Jiao Tong University, Shanghai, 200240, China. Electronic address:
This study delves into the multi-scale temporal and spatial variations of soil heat flux (G) within riparian zones and its correlation with net radiation (Rn) across six riparian woodlands in Shanghai, each characterized by distinct vegetation types. The objective is to assess the complex interrelations between G and Rn, and how these relationships are influenced by varying vegetation and seasons. Over the course of a year, data on G and Rn is collected to investigate their dynamics.
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Laboratory of Environmental Microbiology and Ecology (LEnME), Department of Life Science, National Institute of Technology, Rourkela, Odisha 769008, India. Electronic address:
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