Effective immune surveillance by CD8(+) cytotoxic T cells of intracellular microbes and cancer depends on the antigen presentation pathway. This pathway produces an optimal peptide repertoire for presentation by major histocompatibility (MHC) class I molecules (pMHCs I) on the cell surface. We have known for years that the pMHC I repertoire is a reflection of the intracellular protein pool. However, many studies have revealed that pMHCs I present peptides not only from precursors encoded in open-reading frames of mRNA transcripts but also cryptic peptides encoded in apparently 'untranslated' regions. These sources vastly increase the availability of peptides for presentation and immune evasion. Here, we review studies on the composition of the cryptic pMHC I repertoire, the immunological significance of these pMHC I, and the novel translational mechanisms that generate cryptic peptides from unusual sources.
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http://dx.doi.org/10.1111/imr.12434 | DOI Listing |
Protein Sci
January 2025
Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, USA.
After overexpression in a suitable host, recombinant protein purification often relies on affinity (e.g., poly-histidine) and solubility-enhancing (e.
View Article and Find Full Text PDFCell
December 2024
Institut Curie, PSL University, Inserm U932, Immunity and Cancer, 75005 Paris, France. Electronic address:
Alternative splicing enhances protein diversity in different ways, including through exonization of transposable elements (TEs). Recent transcriptomic analyses identified thousands of unannotated spliced transcripts with exonizing TEs, but their contribution to the proteome and biological relevance remains unclear. Here, we use transcriptome assembly, ribosome profiling, and proteomics to describe a population of 1,227 unannotated TE exonizing isoforms generated by mRNA splicing and recurrent in human populations.
View Article and Find Full Text PDFChem Biodivers
December 2024
Zhejiang University of Technology, School of Pharmaceutical Sciences, Chaowang Road No.18, Not Available, 310014, Hangzhou, CHINA.
Overexpression of a global transcriptional regulator LaeA was performed to awaken cryptic biosynthetic gene clusters (BGCs) in a marine sponge-derived fungus, Aspergillus niger L14, to obtain secondary metabolites (SMs), and resulted in the production of five previously undiscovered SMs in the wild-type strain, including three cyclic lipopeptides aspochracin (1), JBIR-15 (2) and sclerotiotide C (3), and kojic acid (4) and penicillic acid (5). Bioassays revealed that compound 2 displayed promising antimicrobial effects on Candida albicans with a MIC value of 32 µg/mL and 4 exhibited significant antioxidant activity with the similar IC50 value (5 µg/mL) to that of ascorbic acid. Transcriptome analysis results indicated that the overexpression of LaeA in strain L14 remarkably enhanced the expression of genes involved in polyketide synthase-nonribosomal peptide synthetase (PKS/NRPS) hybrids and amino acid metabolism, demonstrating an effective approach for a production of cyclic lipopeptides.
View Article and Find Full Text PDFJ Nat Prod
December 2024
State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong 266237, People's Republic of China.
are abundant in the oceans and possess great potential in the synthesis of bioactive natural products. Although many secondary metabolite biosynthetic gene clusters have been identified from genomes, most of their products have not been characterized. In this study, endogenous constitutive promoters with high transcriptional activity were obtained from S16 through RNA-seq and a fluorescence assay of luciferase gene expression.
View Article and Find Full Text PDFbioRxiv
November 2024
James Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, IN 47906.
Cyclic tetrapeptides (CTPs) are a diverse class of natural products with a broad range of biological activities. However, they are extremely challenging to synthesize due to the ring strain associated with their small ring size. While chemical methods have been developed to access CTPs, they generally require the presence of certain amino acids, limiting their substrate scopes.
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