: a Swiss army knife for structure factor analysis and validation.

J Appl Crystallogr

Research Collaboratory for Structural Bioinformatics Protein Data Bank, Department of Chemistry and Chemical Biology, Center for Integrative Proteomics Research, Rutgers, State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854, USA; Institute for Quantitative BioMedicine, Rutgers, State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854, USA; San Diego Supercomputer Center and Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093, USA.

Published: June 2016

Since 2008, X-ray structure depositions to the Protein Data Bank archive (PDB) have required submission of experimental data in the form of structure factor files. RCSB PDB has developed the program to allow worldwide PDB (wwPDB; http://wwpdb.org) biocurators, using a single command-line program, to invoke a number of third-party software packages to compare the model file with the experimental data. functionality includes structure factor validation, electron-density map generation and slicing, local electron-density analysis, and residual factor analysis. outputs a summary containing various crystallographic statistics in PDBx/mmCIF format for use in automatic data processing and archiving pipelines.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886994PMC
http://dx.doi.org/10.1107/S1600576716004428DOI Listing

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