A DNAzyme-mediated logic gate for programming molecular capture and release on DNA origami.

Chem Commun (Camb)

School of Mechanical Engineering, Purdue University, West Lafayette, Indiana 47907, USA.

Published: June 2016

Here we design a DNA origami-based site-specific molecular capture and release platform operated by a DNAzyme-mediated logic gate process. We show the programmability and versatility of this platform with small molecules, proteins, and nanoparticles, which may also be controlled by external light signals.

Download full-text PDF

Source
http://dx.doi.org/10.1039/c6cc02989bDOI Listing

Publication Analysis

Top Keywords

dnazyme-mediated logic
8
logic gate
8
molecular capture
8
capture release
8
gate programming
4
programming molecular
4
release dna
4
dna origami
4
origami design
4
design dna
4

Similar Publications

Scalable Logic Circuits with Multiple Outputs and an Automatic Reset Function Based on DNAzyme-Mediated Branch Migration.

Anal Chem

February 2021

National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-Environmental Pollution Control and Management, Institute of Eco-Environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China.

A scalable logic platform made up of multilayer DNA circuits was constructed using Pb, Cu, and Zn as the three inputs and three different fluorescent signals as the outputs. DNAzyme-guided cyclic cleavage reactions and DNA toehold-mediated strand branch migration were utilized to organize and connect nucleic acid probes for building the high-level logic architecture. The sequence communications between each circuit enable the logic network to work as a keypad lock, which is an information protection model at the molecular level.

View Article and Find Full Text PDF

A DNAzyme-mediated logic gate system based on Ag(I)-cysteine.

Analyst

October 2020

School of Computer Science and Technology, Dalian University of Technology, Dalian 116024, China.

Ag+ plays an important role in DNA mismatch technology due to its affinity for cytosine in DNA. This article introduces a strategy to control the enzyme digesting reaction by utilizing the characteristics of C-Ag+-C mismatches, effectively regulating and controlling the activity of the E6 DNAzyme via changing the structure of its conservative domain. We designed a series of basic logic gates, a "Yes" Gate, an "Or" Gate and an "Inhibit" Gate.

View Article and Find Full Text PDF

Here we design a DNA origami-based site-specific molecular capture and release platform operated by a DNAzyme-mediated logic gate process. We show the programmability and versatility of this platform with small molecules, proteins, and nanoparticles, which may also be controlled by external light signals.

View Article and Find Full Text PDF

DNAzyme-Based Logic Gate-Mediated DNA Self-Assembly.

Nano Lett

January 2016

School of Molecular Sciences, Center for Molecule Design and Biomimetics at the Biodesign Institute, Arizona State University, Tempe, Arizona 85281, United States.

Controlling DNA self-assembly processes using rationally designed logic gates is a major goal of DNA-based nanotechnology and programming. Such controls could facilitate the hierarchical engineering of complex nanopatterns responding to various molecular triggers or inputs. Here, we demonstrate the use of a series of DNAzyme-based logic gates to control DNA tile self-assembly onto a prescribed DNA origami frame.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!