Although Neandertal sequences that persist in the genomes of modern humans have been identified in Eurasians, comparable studies in people whose ancestors hybridized with both Neandertals and Denisovans are lacking. We developed an approach to identify DNA inherited from multiple archaic hominin ancestors and applied it to whole-genome sequences from 1523 geographically diverse individuals, including 35 previously unknown Island Melanesian genomes. In aggregate, we recovered 1.34 gigabases and 303 megabases of the Neandertal and Denisovan genome, respectively. We use these maps of archaic sequences to show that Neandertal admixture occurred multiple times in different non-African populations, characterize genomic regions that are significantly depleted of archaic sequences, and identify signatures of adaptive introgression.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6743480PMC
http://dx.doi.org/10.1126/science.aad9416DOI Listing

Publication Analysis

Top Keywords

neandertal denisovan
8
archaic sequences
8
excavating neandertal
4
denisovan dna
4
dna genomes
4
genomes melanesian
4
melanesian individuals
4
individuals neandertal
4
sequences
4
neandertal sequences
4

Similar Publications

Tracing the Evolution of Human Immunity Through Ancient DNA.

Annu Rev Immunol

December 2024

1Institut Pasteur, Université Paris Cité, CNRS UMR 2000, Human Evolutionary Genetics Unit, Paris, France; email:

Infections have imposed strong selection pressures throughout human evolution, making the study of natural selection's effects on immunity genes highly complementary to disease-focused research. This review discusses how ancient DNA studies, which have revolutionized evolutionary genetics, increase our understanding of the evolution of human immunity. These studies have shown that interbreeding between modern humans and Neanderthals or Denisovans has influenced present-day immune responses, particularly to viruses.

View Article and Find Full Text PDF
Article Synopsis
  • Genomic and ancient DNA data have dramatically changed our understanding of human evolution, particularly with the successful sequencing of Neanderthal and Denisovan genomes.
  • The theory of interbreeding between Neanderthals and Homo sapiens has evolved from skepticism to general acceptance, largely based on statistical models that may overlook the complexities of population structure.
  • Research using simulated data revealed that many existing models inaccurately identified admixture events and emphasized the need to consider population structure for a more accurate understanding of human evolutionary history.
View Article and Find Full Text PDF

Archaic hominin admixture and its consequences for modern humans.

Curr Opin Genet Dev

November 2024

Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton 08540, USA. Electronic address:

As anatomically modern humans dispersed out of Africa, they encountered and mated with now extinct hominins, including Neanderthals and Denisovans. It is now well established that all non-African individuals derive approximately 2% of their genome from Neanderthal ancestors and individuals of Melanesian and Australian aboriginal ancestry inherited an additional 2%-5% of their genomes from Denisovan ancestors. Attention has started to shift from documenting amounts of archaic admixture and identifying introgressed segments to understanding their molecular, phenotypic, and evolutionary consequences and refining models of human history.

View Article and Find Full Text PDF

The identification of a new hominin group in the Altai mountains called Denisovans was one of the most exciting discoveries in human evolution in the last decade. Unlike Neanderthal remains, the Denisovan fossil record consists of only a finger bone, jawbone, teeth and skull fragments. Leveraging the surviving Denisovan segments in modern human genomes has uncovered evidence of at least three introgression events from distinct Denisovan populations into modern humans in the past.

View Article and Find Full Text PDF

The ability to metabolize lactose in adulthood is associated with the persistence of lactase enzyme activity. In European populations, lactase persistence is determined mainly by the presence of the rs4988235-T variant in the MCM6 gene, which increases the expression of the LCT gene, encoding lactase. The highest rates of lactase persistence are characteristic of Europeans, and the lowest rates are found in East Asian populations.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!