In 2008, the platform "GenoSol" ( http://www.dijon.inra.fr/plateforme_genosol ) was created at the INRA (French National Institute for Agronomic Research) of Dijon. This platform was launched by several soil microbial ecologist senior scientists to provide a logistics and technical structure dedicated to the acquisition, conservation, characterization, and supply of genetic resources (DNA) of soils from very large-scale samplings (several hundred to several thousand corresponding to large spatial and/or temporal scales). Thanks to this structure metagenomic analysis of soil microbial communities has been standardized as well as a reliable reference system for analysis of the microbial genetic resources of the collected soils (more than 10,000 soil samples to date). This platform also illustrates the usefulness of existing soil archives in providing a readily available source of ecological information that is relevant to microbial ecology, probably more than we can currently fathom.
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http://dx.doi.org/10.1007/978-1-4939-3369-3_3 | DOI Listing |
Environ Sci Technol
January 2025
College of Environment, Zhejiang University of Technology, Hangzhou 310032, P. R. of China.
Soil microbiota plays crucial roles in maintaining the health, productivity, and nutrient cycling of terrestrial ecosystems. The persistence and prevalence of heterocyclic compounds in soil pose significant risks to soil health. However, understanding the links between heterocyclic compounds and microbial responses remains challenging due to the complexity of microbial communities and their various chemical structures.
View Article and Find Full Text PDFInt J Mol Sci
December 2024
College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
Microbes have been shown to adapt to stressful or even lethal conditions through displaying genome plasticity. However, how bacteria utilize the ability of genomic plasticity to deal with high antimony (Sb) stress has remained unclear. In this study, the spontaneous mutant strain SMAs-55 of sp.
View Article and Find Full Text PDFInt J Mol Sci
December 2024
USDA-ARS, US Arid Land Agricultural Research Center, 21881 North Cardon Lane Maricopa, Maricopa, AZ 85138, USA.
As farming practices evolve and climate conditions shift, achieving sustainable food production for a growing global population requires innovative strategies to optimize environmentally friendly practices and minimize ecological impacts. Agroecosystems, which integrate agricultural practices with the surrounding environment, play a vital role in maintaining ecological balance and ensuring food security. Rhizosphere management has emerged as a pivotal approach to enhancing crop yields, reducing reliance on synthetic fertilizers, and supporting sustainable agriculture.
View Article and Find Full Text PDFInt J Mol Sci
December 2024
Key Laboratory of Agro-Environment in Tropics, Ministry of Agriculture and Rural Affairs, Guangdong Engineering Research Centre for Modern Eco-Agriculture and Circular Agriculture, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China.
, one of the world's most destructive invasive species, is known for causing significant ecological and economic harm. While extensive research has focused on its growth characteristics, secondary metabolites, and control measures, its chemical interactions with the environment-particularly the role of flavonoids in shaping soil microbial communities-remain underexplored. In this study, we identified and quantified ten flavonoids from root exudates using UPLC-MS, including Hispidulin, Isorhamnetin, and Mikanin.
View Article and Find Full Text PDFHeavy metal pollution in soil is a significant challenge around the world, particularly cadmium (Cd) contamination. In situ phytoextraction and remediation technology, particularly focusing on Cd hyperaccumulator plants, has proven to be an effective method for cleaning Cd-contaminated agricultural lands. However, this strategy is often hindered by a long remediation cycle and low efficiency.
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