[Strategies for biobank networks. Classification of different approaches for locating samples and an outlook on the future within the BBMRI-ERIC].

Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz

Medizinische Informatik in der Translationalen Onkologie, Deutsches Krebsforschungszentrum, Im Neuenheimer Feld 280, 69120, Heidelberg, Deutschland.

Published: March 2016

Background: Medical research projects often require more biological material than can be supplied by a single biobank. For this reason, a multitude of strategies support locating potential research partners with matching material without requiring centralization of sample storage.

Objectives: Classification of different strategies for biobank networks, in particular for locating suitable samples. Description of an IT infrastructure combining these strategies.

Materials And Methods: Existing strategies can be classified according to three criteria: (a) granularity of sample data: coarse bank-level data (catalogue) vs. fine-granular sample-level data, (b) location of sample data: central (central search service) vs. decentral storage (federated search services), and (c) level of automation: automatic (query-based, federated search service) vs. semi-automatic (inquiry-based, decentral search). All mentioned search services require data integration. Metadata help to overcome semantic heterogeneity.

Results: The "Common Service IT" in BBMRI-ERIC (Biobanking and BioMolecular Resources Research Infrastructure) unites a catalogue, the decentral search and metadata in an integrated platform. As a result, researchers receive versatile tools to search suitable biomaterial, while biobanks retain a high degree of data sovereignty.

Conclusions: Despite their differences, the presented strategies for biobank networks do not rule each other out but can complement and even benefit from each other.

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Source
http://dx.doi.org/10.1007/s00103-015-2299-yDOI Listing

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