The Utility of Fisher's Geometric Model in Evolutionary Genetics.

Annu Rev Ecol Evol Syst

IAME, UMR 1137, INSERM, F-75018 Paris, France ; IAME, UMR 1137, Univ. Paris Diderot, Sorbonne Paris Cité, F-75018 Paris, France.

Published: November 2014

AI Article Synopsis

  • The accumulation of genomic data has sparked renewed interest in theoretical adaptation models, with the Fisher Geometric Model (FGM) gaining significant attention for studying individual mutation effects.
  • FGM operates on a multidimensional phenotypic landscape, effectively addressing both beneficial and harmful mutations while considering mutation and epistatic interactions.
  • The review discusses FGM's properties, examines experimental data supporting the model, and explores future research directions to integrate FGM with molecular aspects of adaptation.

Article Abstract

The accumulation of data on the genomic bases of adaptation has triggered renewed interest in theoretical models of adaptation. Among these models, Fisher Geometric Model (FGM) has received a lot of attention over the last two decades. FGM is based on a continuous multidimensional phenotypic landscape, but it is for the emerging properties of individual mutation effects that it is mostly used. Despite an apparent simplicity and a limited number of parameters, FGM integrates a full model of mutation and epistatic interactions that allows the study of both beneficial and deleterious mutations, and subsequently the fate of evolving populations. In this review, I present the different properties of FGM and the qualitative and quantitative support they have received from experimental evolution data. I later discuss how to estimate the different parameters of the model and outline some future directions to connect FGM and the molecular determinants of adaptation.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4699269PMC
http://dx.doi.org/10.1146/annurev-ecolsys-120213-091846DOI Listing

Publication Analysis

Top Keywords

geometric model
8
fgm
5
utility fisher's
4
fisher's geometric
4
model
4
model evolutionary
4
evolutionary genetics
4
genetics accumulation
4
accumulation data
4
data genomic
4

Similar Publications

Contextual modulation emerges by integrating feedforward and feedback processing in mouse visual cortex.

Cell Rep

December 2024

Center for Theoretical Neuroscience and Mortimer B Zuckerman Mind Brain Behavior Institute, Columbia University, New York City, NY 10027, USA; Department of Neuroscience, Swartz Program in Theoretical Neuroscience, Kavli Institute for Brain Science, College of Physicians and Surgeons and Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York City, NY 10027, USA.

Sensory systems use context to infer meaning. Accordingly, context profoundly influences neural responses to sensory stimuli. However, a cohesive understanding of the circuit mechanisms governing contextual effects across different stimulus conditions is still lacking.

View Article and Find Full Text PDF
Article Synopsis
  • The study aimed to assess the biomechanical performance of different designs of three-unit implant-supported prostheses using two materials (Zirconia and PEKK) under various loading conditions.
  • Three models were created with different implant placements to analyze three designs: distal cantilever, fixed-fixed, and mesial cantilever, utilizing finite element analysis for stress evaluation.
  • Results indicated that the fixed-fixed design performed best, with PEKK showing lower stress in some areas but higher stress in others compared to Zirconia, highlighting the importance of design and material choice in prosthodontics.
View Article and Find Full Text PDF

Background And Objectives: Epcoritamab is a CD3xCD20 bispecific antibody approved for the treatment of adults with different types of relapsed or refractory (R/R) B cell non-Hodgkin lymphoma (B-NHL) after ≥ 2 lines of systemic therapy. Here we report the first results from a population pharmacokinetic model-based analysis using data from 2 phase 1/2 clinical trials (EPCORE NHL-1, NCT03625037 and EPCORE NHL-3, NCT04542824) evaluating epcoritamab in patients with R/R B-NHL.

Methods: Plasma concentration-time data included 6819 quantifiable pharmacokinetic samples from 327 patients with R/R B-NHL.

View Article and Find Full Text PDF

Identification of D842V mutation in gastrointestinal stromal tumors based on CT radiomics: a multi-center study.

Cancer Imaging

December 2024

Department of Radiology, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Pujian Road 160, Pudong District, 200127, Shanghai, China.

Background: Gastrointestinal stromal tumors (GISTs) are the most common mesenchymal tumors of the gastrointestinal tract. Recent advent of tyrosine kinase inhibitors (TKIs) has significantly improved the prognosis of GIST patients. However, responses to TKI therapy can vary depending on the specific gene mutation.

View Article and Find Full Text PDF

Interface-aware molecular generative framework for protein-protein interaction modulators.

J Cheminform

December 2024

College of Computer Science and Electronic Engineering, Hunan University, Changsha, 410082, Hunan, China.

Protein-protein interactions (PPIs) play a crucial role in numerous biochemical and biological processes. Although several structure-based molecular generative models have been developed, PPI interfaces and compounds targeting PPIs exhibit distinct physicochemical properties compared to traditional binding pockets and small-molecule drugs. As a result, generating compounds that effectively target PPIs, particularly by considering PPI complexes or interface hotspot residues, remains a significant challenge.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!