Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions.

Cold Spring Harb Protoc

Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec H3C 3J7, Canada; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada; School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, United Kingdom.

Published: January 2016

The BioGRID database is an extensive repository of curated genetic and protein interactions for the budding yeast Saccharomyces cerevisiae, the fission yeast Schizosaccharomyces pombe, and the yeast Candida albicans SC5314, as well as for several other model organisms and humans. This protocol describes how to use the BioGRID website to query genetic or protein interactions for any gene of interest, how to visualize the associated interactions using an embedded interactive network viewer, and how to download data files for either selected interactions or the entire BioGRID interaction data set.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5975959PMC
http://dx.doi.org/10.1101/pdb.prot088880DOI Listing

Publication Analysis

Top Keywords

biogrid database
8
genetic protein
8
protein interactions
8
interactions
5
biogrid
4
database analysis
4
yeast
4
analysis yeast
4
yeast protein
4
protein genetic
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!