N(6)-methyladenosine (m(6)A) is the most common reversible internal modification in mammalian RNA. Changes in m(6)A levels have been implicated in a variety of cellular processes, including nuclear RNA export, control of protein translation, and protein splicing, and they have been linked to obesity, cancer, and other human diseases. METTL3 and METTL14 are N(6)-adenosine methyltransferases that work more efficiently in a stable METTL3-METTL14 heterodimer complex (METTL3-14). ALKBH5 is an m(6)A-RNA demethylase that belongs to the AlkB family of dioxygenases. We report the development of radioactivity-based assays for kinetic characterization of m(6)A-RNA modifications by METTL3-14 complex and ALKBH5 and provide optimal assay conditions suitable for screening for ligands in a 384-well format with Z' factors of 0.78 and 0.77, respectively.
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http://dx.doi.org/10.1177/1087057115623264 | DOI Listing |
Curr Protoc
December 2024
Department of Biotechnology, All India Institute of Medical Sciences, Ansari Nagar, New Delhi, India.
Advances in sequencing technology have led to the discovery of diverse types of regulatory RNAs. Differential transcript levels regulate cellular processes and influence disease severity. Identifying these variations through reliable methods is crucial for understanding the regulatory roles and disease mechanisms of regulatory RNAs.
View Article and Find Full Text PDFMethods Mol Biol
November 2024
Department of Biochemistry and Biotechnology, University of Thessaly, Larissa, Greece.
The poly(A) tail is a dynamic structure at the 3'- end of the majority of RNA polymerase II transcripts. It is a critical feature, particularly for mRNAs, as the length of the poly(A) tail regulates their translational efficiency and lifespan. The shortening of the tail is catalyzed by deadenylases that trim and finally remove it, triggering mRNA degradation.
View Article and Find Full Text PDFBiochemistry
November 2023
Department of Molecular Biosciences, University of Texas at Austin, Austin, Texas 78712, United States.
Folding of the group I intron ribozyme and other structured RNAs has been measured using a catalytic activity assay to monitor the native state formation by cleavage of a radiolabeled oligonucleotide substrate. While highly effective, the assay has inherent limitations present in any radioactivity- and gel-based assay. Administrative and safety considerations arise from the radioisotope, and data collection is laborious due to the use of polyacrylamide gels.
View Article and Find Full Text PDFEnviron Monit Assess
September 2023
Southern Federal University, Rostov-on-Don, Russian Federation.
The activity concentration of K in soils of Rostov agglomeration was studied. Natural and anthropogenically modified soils of Rostov agglomeration were studied: Haplic Chernozems, Haplic Chernozems (Technic), Urbic Technosols. Activity concentration K in soils was measured by gamma-spectrometric method of radionuclide analysis.
View Article and Find Full Text PDFMethods Mol Biol
August 2023
Department of Internal Medicine, Division of Pulmonary, Critical Care and Sleep Medicine, University of Texas Medical Branch, Galveston, TX, USA.
Endogenous and exogenous genotoxic agents can generate various types of non-ligatable DNA ends at the site of strand break in the mammalian genome. If not repaired, such lesions will impede transcription and replication and can lead to various cellular pathologies. Among various "dirty" DNA ends, 3'-phosphate is one of the most abundant lesions generated in the mammalian cells.
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