Stochastic model of homogeneous coding and latent periodicity in DNA sequences.

J Theor Biol

Department of Computational Mathematics and Mathematical Physics, Moscow State Technical University n.a. N.E. Bauman, the 2nd Baumanskaya st., 5, 105005 Moscow, Russia. Electronic address:

Published: February 2016

The concept of latent triplet periodicity in coding DNA sequences which has been earlier extensively discussed is confirmed in the result of analysis of a number of eukaryotic genomes, where latent periodicity of a new type, called profile periodicity, is recognized in the CDSs. Original model of Stochastic Homogeneous Organization of Coding (SHOC-model) in textual string is proposed. This model explains the existence of latent profile periodicity and regularity in DNA sequences.

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http://dx.doi.org/10.1016/j.jtbi.2015.11.014DOI Listing

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