Quantitative model selection for enhanced magnetic nanoparticle imaging in magnetorelaxometry.

Med Phys

Department of Electrical Energy, Systems and Automation, Ghent University, Zwijnaarde 9052, Belgium.

Published: December 2015

Purpose: The performance of an increasing number of biomedical applications is dependent on the accurate knowledge of the spatial magnetic nanoparticle (MNP) distribution in the body. Magnetorelaxometry (MRX) imaging is a promising and noninvasive technique for the reconstruction of this distribution. To date, no accurate and quantitative measure is available to compare and optimize different MRX imaging models and setups independent of the MNP distribution. In this paper, the authors employ statistical parameters to develop quantitative MRX imaging models. Using these models, a straightforward optimization of setups and models is possible resulting in improved MNP reconstructions.

Methods: A MRX imaging setup is considered with different coil configurations, each corresponding to a MRX imaging model. The models can be represented by a sensitivity matrix. These are compared by employing the matrices as inputs to statistical parameters such as conditional entropy and mutual information (MI). These parameters determine the best model to reconstruct the MNP amount for each volume-element (voxel) in the sample. The matrix is transformed by multiplying the columns with different weightings depending on the performance of the MRX imaging model with respect to the other models. This transformed matrix is compared to the original sensitivity matrix without weightings.

Results: Compared to the original sensitivity matrix, an increased numerical stability and improved noise robustness for the transformed sensitivity matrix are observed. The reconstruction of the MNP shows improvements: a correlation to the actual MNP distribution of 99.2%, whereas the original matrix only had 82.5%. By selecting the MRX models with the smallest MI, the authors are able to reduce the measurement time by 65% and still obtain an improved imaging accuracy and noise robustness. The statistical parameters allow a direct measure of the relative information content within the setup such that the optimal voxel size for the MRX setup is determined to be between 5 and 15 mm, while other sizes show a significant change in the statistical parameters.

Conclusions: The use of statistical parameters in MRX imaging models results in quantitative models which can optimize MRX setups in a very fast and elegant way such that improved MNP imaging can be realized. Finally, the presented measure allows to quantitatively and accurately compare different MRX models and setups independent of the MNP distribution.

Download full-text PDF

Source
http://dx.doi.org/10.1118/1.4935147DOI Listing

Publication Analysis

Top Keywords

mrx imaging
28
mnp distribution
16
statistical parameters
16
sensitivity matrix
16
imaging models
12
mrx
11
imaging
10
models
10
magnetic nanoparticle
8
mnp
8

Similar Publications

C. and O. Vogt had set up a research program with the aim of establishing a detailed cartography of the medullary fiber distribution of the human brain.

View Article and Find Full Text PDF

Structural connectivity of the ANT region based on human ex-vivo and HCP data. Relevance for DBS in ANT for epilepsy.

Neuroimage

November 2022

MRX-Brain GmbH, Moritz-Sommer-Str. 4., 40225 Duesseldorf, Germany; Department of Neuroanatomy, Heinrich Heine University of Düsseldorf, Universitätsstraße 1, 40225 Düsseldorf, Germany. Electronic address:

Objective: Deep Brain Stimulation (DBS) in the Anterior Nucleus of the Thalamus (ANT) has been shown to be a safe and efficacious treatment option for patients with Drug-Resitant focal Epilepsy (DRE). The ANT has been selected frequently in open and controlled studies for bilateral DBS. There is a substantial variability in ANT-DBS outcomes which is not fully understood.

View Article and Find Full Text PDF

Purpose: One standard method, proton resonance frequency shift, for measuring temperature using magnetic resonance imaging (MRI), in MRI-guided surgeries, fails completely below the freezing point of water. Because of this, we have developed a new methodology for monitoring temperature with MRI below freezing. The purpose of this paper is to show that a strong temperature dependence of the nuclear relaxation time T in soft silicone polymers can lead to temperature-dependent changes of MRI intensity acquired with T weighting.

View Article and Find Full Text PDF

A Role for the Mre11-Rad50-Xrs2 Complex in Gene Expression and Chromosome Organization.

Mol Cell

January 2021

Institut de Génétique Humaine, CNRS, Université de Montpellier, Equipe Labéllisée Ligue contre le Cancer, 34396 Montpellier, France; University of Basel and Friedrich Miescher Institute for Biomedical Research, Faculty of Natural Sciences, Klingelbergstrasse 50, 4056 Basel, Switzerland. Electronic address:

Mre11-Rad50-Xrs2 (MRX) is a highly conserved complex with key roles in various aspects of DNA repair. Here, we report a new function for MRX in limiting transcription in budding yeast. We show that MRX interacts physically and colocalizes on chromatin with the transcriptional co-regulator Mediator.

View Article and Find Full Text PDF

DNA Damage-Induced Nucleosome Depletion Enhances Homology Search Independently of Local Break Movement.

Mol Cell

October 2020

Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland; University of Basel, Faculty of Natural Sciences, 4056 Basel, Switzerland. Electronic address:

To determine whether double-strand break (DSB) mobility enhances the physical search for an ectopic template during homology-directed repair (HDR), we tested the effects of factors that control chromatin dynamics, including cohesin loading and kinetochore anchoring. The former but not the latter is altered in response to DSBs. Loss of the nonhistone high-mobility group protein Nhp6 reduces histone occupancy and increases chromatin movement, decompaction, and ectopic HDR.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!