Comparison of the Standard 6-31G and Binning-Curtiss Basis Sets for Third Row Elements.

J Chem Theory Comput

Department of Chemistry, Memorial University, St. John's, Newfoundland, Canada A1B 3X7.

Published: January 2008

Ab initio calculations were carried out for isogyric reactions involving the third row elements, Ga, Ge, As, Se, and Br. Geometries of all the reactants and products were optimized at the HF, MP2, and B3LYP levels of theory using the 6-31G(d) and 6-31G(d,p) basis sets. For molecules containing third row elements geometries, frequencies and thermodynamic properties were calculated using both the standard 6-31G and the Binning-Curtiss (BC6-31G) basis sets. In order to determine the performance of these basis sets, the calculated thermodynamic properties were compared to G3MP2 values and where possible to experimental values. Geometries and frequencies calculated with the standard 6-31G and the BC6-31G basis sets were found to differ significantly. Frequencies calculated with the standard 6-31G basis set were generally in better agreement with the experimental values (MAD=40.1 cm(-1) at B3LYP/6-31G(d,p) and 94.2 cm(-1) at MP2/6-31G(d,p) for unscaled frequencies and 29.6 cm(-1) and 24.4 cm(-1), respectively, for scaled frequencies). For all the reactions investigated, the thermodynamic properties calculated with the standard 6-31G basis set were found to consistently be in better agreement with the G3MP2 and the available experimental results. However, the BC6-31G basis set performs poorly for the reactions involving both second and third row elements. Since, in general, the standard 6-31G basis set performs well for all the reactions, we recommend that the standard 6-31G basis set be used for calculations involving third row elements. Using G3MP2 enthalpies of reaction and available experimental heats of formation (ΔHf), previously unknown ΔHf for CH3SeH, SiH3SeH, CH3AsH2, SiH3AsH2, CH3GeH3, and SiH3GeH3 were found to be 18.3, 18.0, 38.4, 82.4, 41.9, and 117.4 kJ mol(-1), respectively.

Download full-text PDF

Source
http://dx.doi.org/10.1021/ct700224jDOI Listing

Publication Analysis

Top Keywords

standard 6-31g
28
basis sets
20
third row
20
row elements
20
basis set
20
calculated standard
16
6-31g basis
16
thermodynamic properties
12
bc6-31g basis
12
basis
10

Similar Publications

In this study, one-pot multicomponent reactions of novel chromeno[2,3-c]pyrazole derivatives (1-14) were performed using an AlCl catalyst via cyclisation. Various spectral and chromatographic techniques were used to elucidate the structure of the synthesised derivatives (1-14). The synthesised compounds were then inspected for their antibacterial, antioxidant, and tyrosinase inhibition activities.

View Article and Find Full Text PDF

The microwave spectrum of 2,3-dimethylfuran was investigated using a Fourier-transform microwave spectrometer under supersonic expansion. The molecule possesses two inequivalent methyl internal rotors, causing the splitting of each rotational transition into five torsional species. A total of 337 torsional transitions were assigned and fitted in a global fit with the program XIAM, where accurate and physically meaningful geometry and internal rotation parameters could be deduced.

View Article and Find Full Text PDF

Bis-N-heterocyclic carbene ligands (bis(NHC)) have introduced a new approach to designing homogeneous and heterogeneous catalysts, demonstrating the versatility of ligand concepts in catalysis. This study presents a computational analysis of palladium (+ii and +iv) complexes containing either a normally (bis(nNHC)) or an abnormally (bis(aNHC)) bound CH-bridged bis-N-heterocyclic carbene ligand; in addition, ancillary ligands are permuted from chlorides (X = Cl) to bromides (X = Br). Density functional theory at the B3PW91/6-31G(d)/Lanl2DZ level in the gas phase was used to investigate the electronic structure and bonding properties of bis(NHC)PdX and bis(NHC)PdX for bis(NHC) palladium(ii) dihalide and palladium(iv) tetrachloride complexes, respectively.

View Article and Find Full Text PDF

On the use OF H-NMR chemical shifts and thermodynamic data for the prediction of the predominant conformation of organic molecules in solution: the example of the flavonoid rutin.

RSC Adv

June 2024

Laboratório de Química Computacional e Modelagem Molecular (LQC-MM), Departamento de Química Inorgânica, Instituto de Química, Universidade Federal Fluminense (UFF) Outeiro de São João Batista s/n, Campus do Valonguinho, Centro 24020-141 Niterói RJ Brazil

Conformational analyses of organic compounds in solution still represent a challenge to be overcome. The traditional methodology uses the relative energies of the conformations to decide which one is most likely to exist in the experimental sample. The goal of this work was to deepen the approach of conformational analysis of flavonoid rutin (a well-known antioxidant agent) in DMSO solution.

View Article and Find Full Text PDF

Synthesis, Biological Properties, and Molecular Docking Study of Novel 1,2,3-Triazole-8-quinolinol Hybrids.

ACS Omega

June 2024

Laboratory of Materials, Nanotechnology, and Environment, Department of Chemistry, Faculty of Sciences, Mohammed V University in Rabat, Av. Ibn Battouta PO Box 1014 Agdal, Rabat 10500, Morocco.

A new series of 1,2,3-triazole-8-quinolinol hybrids were synthesized in good yields using monosubstituted acetonitriles and 5-azidomethyl-8-quinolinol as the starting reagents via a one-step protocol. The structures of 1,2,3-triazole-8-quinolinol hybrids were characterized by nuclear magnetic resonance (H and C NMR) spectroscopy and elemental analysis. Antibacterial activity in vitro of all the synthesized hybrids was investigated against (), (), (), and () applying the methods of disk diffusion and minimal inhibition concentration (MIC).

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!