The dynamical requirements for protein thermostability are a subject of intense debate since different techniques are sensitive to different dynamical processes. The present investigation arises from a neutron scattering experiment pointing to the lower temperature dependence of the flexibility of thermophilic proteins as a mechanism of enhanced thermostability. By means of 200 ns molecular dynamics simulations at different temperatures, we have investigated the differences in internal dynamics of the thermo-mesophilic pair of proteins studied in the experiment. The present work exceeds the time scales explored by the experiment and former studies on other thermo-mesophilic pairs by several orders of magnitude. Our simulations confirm the different thermal behavior observed in the experiment and suggest that both reduced coil segments and salt bridge interactions contribute to lowering the increase in flexibility with temperature. Moreover, the mesophilic protein exhibits a more heterogeneous distribution of residue mobilities involving more local motions. We suggest that the more collective motions of the thermophilic protein underlie a broader energy landscape.
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http://dx.doi.org/10.1021/ct200877z | DOI Listing |
Vet Res
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Key Laboratory of Animal Genetics, Breeding and Reproduction in The Plateau Mountainous Region, Ministry of Education, Guizhou University, Guiyang, 550025, China.
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Department of Bioengineering, Gebze Technical University, 41400, Gebze, Kocaeli, Türkiye; BAUZYME Biotechnology Co., Gebze Technical University Technopark, 41400, Gebze, Kocaeli, Türkiye. Electronic address:
α-Amylases, constituting a significant share of the enzyme market, are mainly synthesized by the genus Bacillus. Enzymes tailored for specific industrial applications are needed to meet the growing demand across a range of industries, and thus finding new amylases and optimizing the ones that already exist are extremely important. This study reports the successful expression, characterization and immobilization of P.
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January 2025
Department of Molecular Medicine, University of Pavia, Pavia, Italy. Electronic address:
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View Article and Find Full Text PDFNat Commun
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Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi, PR China.
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View Article and Find Full Text PDFInt J Mol Sci
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Department of Biomedical Sciences, College of Medicine, Korea University, Seoul 02841, Republic of Korea.
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