Highly selective, sensitive and fluorescent sensing of dimeric G-quadruplexes by a dimeric berberine.

Org Biomol Chem

Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Sciences, Southern Medical University, Guangzhou 510515, P. R. China.

Published: January 2016

This paper describes the highly selective, sensitive and topology-specific fluorescent sensing of dimeric G-quadruplexes by a polyether-tethered dimeric berberine 1. Compound 1 displays high selectivity for dimeric G-quadruplexes over monomeric ones, and can be lit up by dimeric G-quadruplexes, in particular by the one linked with one TTA subunit. In addition, it shows no effect on the topology or thermal stability of the G-quadruplexes.

Download full-text PDF

Source
http://dx.doi.org/10.1039/c5ob01723hDOI Listing

Publication Analysis

Top Keywords

dimeric g-quadruplexes
16
highly selective
8
selective sensitive
8
fluorescent sensing
8
sensing dimeric
8
dimeric berberine
8
dimeric
6
g-quadruplexes
5
sensitive fluorescent
4
g-quadruplexes dimeric
4

Similar Publications

Exploring the Interactions Between RHAU Peptide and G-Quadruplex Dimers Based on Chromatographic Retention Behaviors.

Molecules

December 2024

State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry & Chemical Engineering and Center of Materials Analysis, Nanjing University, 163 Xianlin Avenue, Nanjing 210023, China.

G-quadruplex (G4), an important secondary structure of nucleic acids, is polymorphic in structure. G4 monomers can associate with each other to form multimers, which show better application performance than monomers in some aspects. G4 dimers, the simplest and most widespread multimeric structures, are often used as a representative for studying multimers.

View Article and Find Full Text PDF

In this work, we present the case of the G-quadruplex(G4)-forming aptamers we recently identified for the recognition of HMGB1, protein involved in inflammation, autoimmune diseases and cancer. These aptamers were previously analyzed, without annealing them, after proper dilution of the stock solution in a pseudo-physiological buffer mimicking the extracellular environment where the protein exerts its pathological activity, and showed high thermal stability and nuclease resistance, good protein affinity and remarkable in vitro activity. These features were more marked for the aptamers forming dimeric, parallel G4 structures in solution.

View Article and Find Full Text PDF
Article Synopsis
  • - G-quadruplexes (G4s) in RNA are becoming important targets for cancer and disease therapies, with GG motifs being more common than GGG motifs in RNA sequences.
  • - Recent findings indicate that DNA cannot make stable two-tetrad G4 structures, raising questions about the stability of RNA GG motifs and their potential regulatory functions.
  • - This study reveals that RNA GG motifs typically don't form stable intramolecular G4s by themselves; instead, they need to dimerize to create stable structures, which may play a role in RNA aggregation during cellular stress.
View Article and Find Full Text PDF

Cu-mediated telomeric dimeric G-quadruplex DNAzyme for highly sensitive colorimetric detection of deferasirox.

Talanta

February 2025

Pharmaceutical College, Guangxi Key Laboratory of Bioactive Molecules Research and Evaluation, Key Laboratory of Micro-Nanoscale Bioanalysis and Drug Screening of Guangxi Higher Education, Guangxi Medical University, Nanning, 530021, China.

Deferasirox (DEF) is an important iron chelator for treatment of iron overload-related diseases. Monitoring DEF concentration in human serum will provide some valuable information for clinical diagnosis and therapy of such diseases. In this study, we developed a peroxidase-mimicking colorimetric sensor for the detection of DEF by simple assembly of a telomeric dimeric G-quadruplex DNAzyme with Cu.

View Article and Find Full Text PDF

Fluorescence detection of adenosine triphosphate based on dimeric G-quadruplex.

Spectrochim Acta A Mol Biomol Spectrosc

February 2025

School of Life Sciences, Central South University, Changsha, China. Electronic address:

Article Synopsis
  • ATP is a crucial energy carrier in living organisms, linked to various biological processes and diseases, making it an important biomarker for cell viability and food freshness.
  • * The study presents a new ATP detection sensor that utilizes the fluorescence change of dimeric G-quadruplex (Di-G4) in the presence of ATP, showing a linear relationship between fluorescence and ATP concentrations.
  • * When tested on apples, this novel method demonstrated reliable results when compared to traditional ATP assay kits, indicating its potential for practical applications.
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!