Identification of relevant reaction pathways in ever more complex composite materials and nanostructures poses a central challenge to computational materials discovery. Efficient global structure search, tailored to identify chemically relevant intermediates, could provide the necessary first-principles atomistic insight to enable a rational process design. In this work we modify a common feature of global geometry optimization schemes by employing automatically generated collective curvilinear coordinates. The similarity of these coordinates to molecular vibrations enhances the generation of chemically meaningful trial structures for covalently bound systems. In the application to hydrogenated Si clusters, we concomitantly observe a significantly increased efficiency in identifying low-energy structures and exploit it for an extensive sampling of potential products of silicon-cluster soft landing on Si(001) surfaces.
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http://dx.doi.org/10.1021/acs.nanolett.5b03388 | DOI Listing |
Front Plant Sci
January 2025
National Institute of Plant Biotechnology, Indian Council of Agricultural Research (ICAR), New Delhi, India.
The methylation- demethylation dynamics of RNA plays major roles in different biological functions, including stress responses, in plants. mA methylation in RNA is orchestrated by a coordinated function of methyl transferases (writers) and demethylases (Erasers). Genome-wide analysis of genes involved in methylation and demethylation was performed in pigeon pea.
View Article and Find Full Text PDFFront Oncol
January 2025
Department of Stomatology, Tianjin First Central Hospital, Tianjin, China.
Oral squamous cell carcinoma (OSCC) accounts for approximately 90% of all oral cancers, significantly impacting the survival and quality of life of patients. Exosomes, small extracellular vesicles released by cells, play a crucial role in intercellular communication in cancer. Nevertheless, their function and mechanism in OSCC remain elusive.
View Article and Find Full Text PDFBMJ Oncol
March 2024
Institute for Global Health, University College London, London, UK.
The Iraqi population has lived under four decades of conflicts, warfare and political instability. The health consequences of the protracted conflict continue to persist. This work critically analyses Iraq's barriers to delivering and accessing cancer care during the conflicts that Iraq passed through from 1980 to 2017.
View Article and Find Full Text PDFHeart Int
December 2024
Department of Endocrinology, Diabetes and Metabolism, Christian Medical College & Hospital, Vellore, Tamil Nadu, India.
Diabetic cardiomyopathy (DC) is a syndrome of heart failure occurring in patients with diabetes mellitus (DM), independent of other risk factors. It is a relatively underdiagnosed condition with a prolonged subclinical phase. There is an abundance of studies put forward to explain the underlying pathogenic mechanisms observed in this condition.
View Article and Find Full Text PDFPhys Chem Chem Phys
January 2025
Department of Chemistry and Guangdong Provincial Key Laboratory of Catalytic Chemistry, Southern University of Science and Technology, Shenzhen 518055, China.
Theoretical investigations using density functional theory (DFT) and wavefunction theory (WFT) have been performed to understand the geometric and electronic structures, chemical bonding, and structural transformation of 5d6s-metal doped triboron clusters MB (M = La, Ta, Re, Ir; = 1, 3, 5, 7). Global-minimum structural searches find that early-metal doped MB (M = La, Ta) clusters adopt a two-dimensional (2D) planar structure, with σ- and π-type delocalized molecular orbitals (MOs) consisting of M-5d and B-2p atomic orbitals (AOs) identified by chemical bonding analysis. In contrast, late-metal doped MB (M = Re, Ir) clusters prefer three-dimensional (3D) structures of near-pyramidal and triangular pyramid geometries, respectively, which exhibit enhanced stability involving σ- and δ-type M(5d)-B(2p) interactions.
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