Sparse Zero-Sum Games as Stable Functional Feature Selection.

PLoS One

Institute of Cardiometabolism and Nutrition, ICAN, Assistance Publique Hôpitaux de Paris, Pitié-Salpêtrière Hospital, Paris, France; Sorbonne Universités, UPMC University Paris 6, UMR_S 1166, ICAN, NutriOmics Team, Paris, France; INSERM, UMR S U1166, NutriOmics Team, Paris, France; Research Institute for Development, UMI UMMISCO, Bondy, France.

Published: May 2016

In large-scale systems biology applications, features are structured in hidden functional categories whose predictive power is identical. Feature selection, therefore, can lead not only to a problem with a reduced dimensionality, but also reveal some knowledge on functional classes of variables. In this contribution, we propose a framework based on a sparse zero-sum game which performs a stable functional feature selection. In particular, the approach is based on feature subsets ranking by a thresholding stochastic bandit. We provide a theoretical analysis of the introduced algorithm. We illustrate by experiments on both synthetic and real complex data that the proposed method is competitive from the predictive and stability viewpoints.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556702PMC
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0134683PLOS

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