In this study, we report the draft genome of Pseudomonas putida H, a well-known bacterium capable of degrading various aromatic compounds. Its genome size is 6,065 Mbp with a GC content of 61.6%. This work will aid future studies on this versatile bacterium.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4543510 | PMC |
http://dx.doi.org/10.1128/genomeA.00936-15 | DOI Listing |
Ecol Evol
December 2024
First Zoological Department Vienna Museum of Natural History Vienna Austria.
The Dinaric Karst extends along the Adriatic coast of the Western Balkan Peninsula and is home to a group of "karst minnows" of the genera , , and , which have adapted to the highly variable water conditions in the karst by spending up to several months underground, but require surface habitats for spawning, defining them as substygophiles. The three species of the genus , , , and , are defined by restricted ranges, making them vulnerable to pollution and extended draughts caused by the climate change. In this study, the phylogeny of Leusciscinae was reconstructed using 15 and one , one , and one complete mitochondrial genomes and the position of the genus within the subfamily as sister species to the clade was confirmed.
View Article and Find Full Text PDFGenome Res
December 2024
Institute for Integrative Systems Biology, Spanish National Research Council;
While the production of a draft genome has become more accessible due to long-read sequencing, the annotation of these new genomes has not been developed at the same pace. Long-read RNA sequencing (lrRNA-seq) offers a promising solution for enhancing gene annotation. In this study, we explore how sequencing platforms, Oxford Nanopore R9.
View Article and Find Full Text PDFMicrobiol Resour Announc
December 2024
Applied BioSciences, Macquarie University, Sydney, New South Wales, Australia.
The entomopathogenic fungus infects diverse insect host species. We present an annotated draft genome of (Commonwealth Scientific and Industrial Research Organisation [CSIRO] strain M-1000) isolated from a species individual, thereby contributing to future research of as a potential biological control agent.
View Article and Find Full Text PDFMicrobiol Resour Announc
December 2024
Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, Oklahoma, USA.
The draft genome sequence of sp. strain Wilcox, isolated from produced water, is presented. The genome is 3.
View Article and Find Full Text PDFJ Appl Microbiol
December 2024
Environmental Biotechnology Laboratory, Environmental Toxicology Group, FEST Division, CSIR-Indian Institute of Toxicology Research, Vishvigyan Bhawan, 31 Mahatma Gandhi Marg, Lucknow-226001, Uttar Pradesh, India.
Aims: To isolate polyethylene terephthalate (PET) degrading bacteria and elucidate the underlying mechanisms of PET biodegradation through biochemical and genome analysis.
Methods And Results: A Rhodococcus rhodochrous IITR131 was found to degrade PET. Strain IITR131 genome revealed metabolic versatility of the bacterium and had the ability to form biofilm on PET sheet resulting in the cracks, abrasions, and degradation.
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