Ion channels catalyze ionic permeation across membranes via water-filled pores. To understand how changes in intracellular magnesium concentration regulate the influx of Mg2+ into cells, we examine early events in the relaxation of Mg2+ channel CorA toward its open state using massively-repeated molecular dynamics simulations conducted either with or without regulatory ions. The pore of CorA contains a 2-nm-long hydrophobic bottleneck which remained dehydrated in most simulations. However, rapid hydration or "wetting" events concurrent with small-amplitude fluctuations in pore diameter occurred spontaneously and reversibly. In the absence of regulatory ions, wetting transitions are more likely and include a wet state that is significantly more stable and more hydrated. The free energy profile for Mg2+ permeation presents a barrier whose magnitude is anticorrelated to pore diameter and the extent of hydrophobic hydration. These findings support an allosteric mechanism whereby wetting of a hydrophobic gate couples changes in intracellular magnesium concentration to the onset of ionic conduction.
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http://dx.doi.org/10.1371/journal.pcbi.1004303 | DOI Listing |
Nat Struct Mol Biol
November 2024
Department of Experimental Medical Science, Lund University, Lund, Sweden.
The CorA/Mrs2 family of pentameric proteins are cardinal for the influx of Mg across cellular membranes, importing the cation to mitochondria in eukaryotes. Yet, the conducting and regulation mechanisms of permeation remain elusive, particularly for the eukaryotic Mrs2 members. Here, we report closed and open Mrs2 cryo-electron microscopy structures, accompanied by functional characterization.
View Article and Find Full Text PDFNat Struct Mol Biol
November 2024
Department of Cell Biology and Physiology, Washington University School of Medicine, Saint Louis, MO, USA.
The human mitochondrial RNA splicing 2 protein (MRS2) has been implicated in Mg transport across mitochondrial inner membranes, thus having an important role in Mg homeostasis critical for mitochondrial integrity and function. However, the molecular mechanisms underlying its fundamental channel properties such as ion selectivity and regulation remain unclear. Here we present a structural and functional investigation of MRS2.
View Article and Find Full Text PDFBiochem Biophys Res Commun
September 2024
Division of Biomedical Convergence, College of Biomedical Science, Kangwon National University, Chuncheon, 24341, Republic of Korea. Electronic address:
CorA is a Mg channel that plays a key role in the homeostasis of intracellular Mg in bacteria and archaea. CorA consists of a cytoplasmic domain and a transmembrane domain and generates a Mg pathway by forming a pentamer in the cell membrane. CorA gating is regulated via negative feedback by Mg, which is accommodated by the pentamerization interface of the CorA cytoplasmic domain (CorA).
View Article and Find Full Text PDFFront Neurorobot
February 2024
School of Computer, Qinghai Normal University, Xining, Qinghai, China.
The existing network representation learning algorithms mainly model the relationship between network nodes based on the structural features of the network, or use text features, hierarchical features and other external attributes to realize the network joint representation learning. Capturing global features of the network allows the obtained node vectors to retain more comprehensive feature information during training, thereby enhancing the quality of embeddings. In order to preserve the global structural features of the network in the training results, we employed a multi-channel learning approach to perform high-order feature modeling on the network.
View Article and Find Full Text PDFNat Commun
November 2023
Unit on Structural Biology, Division of Basic and Translational Biophysics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 20892, USA.
Magnesium ions (Mg) play an essential role in cellular physiology. In mitochondria, protein and ATP synthesis and various metabolic pathways are directly regulated by Mg. MRS2, a magnesium channel located in the inner mitochondrial membrane, mediates the influx of Mg into the mitochondrial matrix and regulates Mg homeostasis.
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