Efficient purification and concentration of viruses from a large body of high turbidity seawater.

MethodsX

Laboratory of Quality and Safety Risk Assessment for Aquatic Products on Storage & Preservation (Shanghai), Ministry of Agriculture, China ; College of Food Science and Technology, Shanghai Ocean University, Shanghai, China.

Published: July 2015

Marine viruses are the most abundant entities in the ocean and play crucial roles in the marine ecological system. However, understanding of viral diversity on large scale depends on efficient and reliable viral purification and concentration techniques. Here, we report on developing an efficient method to purify and concentrate viruses from large body of high turbidity seawater. The developed method characterizes with high viral recovery efficiency, high concentration factor, high viral particle densities and high-throughput, and is reliable for viral concentration from high turbidity seawater. Recovered viral particles were used directly for subsequent analysis by epifluorescence microscopy, transmission electron microscopy and metagenomic sequencing. Three points are essential for this method:•The sampled seawater (>150 L) was initially divided into two parts, water fraction and settled matter fraction, after natural sedimentation.•Both viruses in the water fraction concentrated by tangential flow filtration (TFF) and viruses isolated from the settled matter fraction were considered as the whole viral community in high turbidity seawater.•The viral concentrates were re-concentrated by using centrifugal filter device in order to obtain high density of viral particles.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4473021PMC
http://dx.doi.org/10.1016/j.mex.2014.09.001DOI Listing

Publication Analysis

Top Keywords

high turbidity
16
turbidity seawater
12
viral
9
purification concentration
8
viruses large
8
large body
8
high
8
body high
8
reliable viral
8
high viral
8

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!