A coarse-grain force-field for xylan and its interaction with cellulose.

Carbohydr Polym

Univ. Grenoble Alpes, CERMAV, F-38000 Grenoble, France; CNRS, CERMAV, F-38000 Grenoble, France. Electronic address:

Published: March 2016

We have built a coarse-grain (CG) model describing xylan and its interaction with crystalline cellulose surfaces. Each xylosyl or glucosyl unit was represented by a single grain. Our calculations rely on force-field parameters adapted from the atomistic description of short xylan fragments and their adsorption on cellulose. This CG model was first validated for xylan chains both isolated and in the bulk where a good match was found with its atomistic counterpart as well as with experimental measurements. A similar agreement was also found when short xylan fragments were adsorbed on the (110) surface of crystalline cellulose. The CG model, which was extended to the (100) and (1-10) surfaces, revealed that the adsorbed xylan, which was essentially extended in the atomistic situation, could also adopt coiled structures, especially when laying on the hydrophobic cellulose surfaces.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.carbpol.2015.04.003DOI Listing

Publication Analysis

Top Keywords

xylan interaction
8
crystalline cellulose
8
cellulose surfaces
8
short xylan
8
xylan fragments
8
cellulose model
8
xylan
6
cellulose
5
coarse-grain force-field
4
force-field xylan
4

Similar Publications

Xylan structural diversity, biosynthesis, and functional regulation in plants.

Int J Biol Macromol

December 2024

State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Guangzhou 510642, China; Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architectures, South China Agricultural University, Guangzhou 510642, China. Electronic address:

Xylan is a vital component of plant cell walls, contributing to their structural integrity and flexibility through interactions with other polymers. Its structure varies among plant species, influencing the mechanical properties of cell walls. Xylan also has significant industrial potential, including in biofuels, biomaterials, food, and pharmaceuticals, due to its ability to be converted into valuable bioproducts.

View Article and Find Full Text PDF

Structural and functional snapshots of a broad-specificity endoglucanase from Thermogutta terrifontis for biomass saccharification.

Arch Biochem Biophys

December 2024

The Division of Structural Biology, The Nuffield Department of Medicine, University of Oxford, UK; The Rosalind Franklin Institute, Harwell Campus, Didcot, OX11 0QS, UK. Electronic address:

Multifunctionality, processivity, and thermostability are critical for the cost-effective enzymatic saccharification of non-food plant biomass polymers such as β-glucans, celluloses, and xylans to generate biofuels and other valuable products. We present molecular insights into a processive multifunctional endo-1,3-1,4-β-d-glucanase (Tt_End5A) from the hyperthermophilic bacterium Thermogutta terrifontis. Tt_End5A demonstrated activities against a broad spectrum of β-polysaccharides, including barley glucan, lichenan, carboxymethyl cellulose, regenerated amorphous cellulose (RAC), Avicel, xylan, laminarin, mannan, curdlan, xanthan, and various chromogenic substrates at pH 7 and temperatures ranging from 70 to 80°C.

View Article and Find Full Text PDF

Xylan, a pivotal polymer with diversified structures, is indispensable for cell wall integrity and contributes to plant growth and biomass recalcitrance. Xylan is synthesized by multienzyme complexes named xylan synthase complexes (XSCs). However, the biochemical mechanism of XSCs and the functions of core components within XSC remain unclear.

View Article and Find Full Text PDF

Rhombic-spot disease, caused mainly by , significantly impacts the yield and quality of fishscale bamboo (). Xylanases are essential for pathogenic fungi infection, yet their specific functions in the physiology and pathogenicity of remain unclear. Here, we characterized three xylanase proteins with glycosyl hydrolase 11 domains from the SICAUCC 16-0001 genome and examined the function of Nsxyn1 and Nsxyn2.

View Article and Find Full Text PDF

Hyperthermophilic xylanase and thermophilicity analysis by molecular dynamic simulation with quantum mechanics.

Appl Microbiol Biotechnol

December 2024

Biorefinery and Bioproduct Technology Research Group, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phaholyothin Road, Khlong Luang, 12120, Patumthani, Thailand.

Thermophilic xylanases catalyzing the cleavage of β-1,4-glycosidic bonds in xylan have applications in food, feed, biorefinery, and pulp industries. In this study, a hyperthermophilic endo-xylanase was obtained by further enhancement of thermal tolerance of a thermophilic GH11 xylanase originated from metagenome of bagasse pile based on rational design. Introducing N13F and Q34L to the previously reported X11P enzyme shifted the optimal working temperature to 85 °C and led to 20.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!