A Gram-staining-negative, aerobic and rod-shaped bacterium, designated HME8881T, was isolated from a freshwater wetland located in the Republic of Korea. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain HME8881T grouped with members of the genus Ferruginibacter. The most closely related species were Ferruginibacter lapsinanis HU1-HG42T (95.6%), Ferruginibacter alkalilentus HU1-GD23T (95.1%), 'Ferruginibacter profundus' DS48-5-3 (94.7%) and Ferruginibacter yonginensis HME8442T (93.4%). The major fatty acids were iso-C15 : 0, summed feature 3 (comprising C16 : 1ω7c and/or C16 : 1ω6c), iso-C15 : 1G, C16 : 0 and iso-C17 : 0 3-OH. A polar lipid analysis revealed phosphatidylethanolamine, two unidentified aminolipids, three unidentified aminophospholipids, two unidentified phospholipids and two unidentified lipids. DNA G+C content was 37.7 mol%. These results suggest that strain HME8881T represents a novel species of the genus Ferruginibacter, for which the name Ferruginibacter paludis sp. nov., is proposed with the type strain HME8881T ( = KCTC 42121T = CECT 8366T). In addition, emended descriptions of Ferruginibacter lapsinanis and Ferruginibacter alkalilentus are also proposed on the basis of new data obtained during this study.
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http://dx.doi.org/10.1099/ijs.0.000311 | DOI Listing |
Int J Syst Evol Microbiol
September 2022
Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration, Wanju-gun, Jeollabuk-do 55365, Republic of Korea.
Two bacterial strains, designated KIS38-8 and F39-2, were isolated from a mountain soil sample and a black locust flower () in Republic of Korea, respectively. The phylogenetic tree based on 16S rRNA gene sequences showed that strain KIS38-8 was classified into the genus with the highest sequence similarity to HU1-HG42 (96.6 %), and strain F39-2 was grouped into the genus with the highest sequence similarity to Jip 10 (97.
View Article and Find Full Text PDFInt J Syst Evol Microbiol
August 2015
Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Gyeonggi 449-791, Republic of Korea.
A Gram-staining-negative, aerobic and rod-shaped bacterium, designated HME8881T, was isolated from a freshwater wetland located in the Republic of Korea. A phylogenetic analysis based on 16S rRNA gene sequences showed that strain HME8881T grouped with members of the genus Ferruginibacter. The most closely related species were Ferruginibacter lapsinanis HU1-HG42T (95.
View Article and Find Full Text PDFAntonie Van Leeuwenhoek
August 2014
Environmental Biotechnology Research Center, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahak-ro, Yuseong-gu, Daejeon, 305-806, Republic of Korea.
A Gram-negative, aerobic, non-motile, and rod-shaped bacterium, designated strain DS48-5-3(T), was isolated from a 48 m sediment sample taken from Daechung Reservoir, Republic of Korea. Comparative 16S rRNA gene sequence studies showed a clear affiliation of this strain to the Bacteroidetes, notably most closely related to Ferruginibacter alkalilentus HU1-GD23(T), Ferruginibacter lapsinanis HU1-HG42(T) and Ferruginibacter yonginensis HME8442(T), showing 16S rRNA gene sequence similarities to the type strains of these species of 95.2-96.
View Article and Find Full Text PDFInt J Syst Evol Microbiol
March 2014
Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies, Wangsan, Yongin, Gyeonggi 449-791, Republic of Korea.
A Gram-stain-negative, rod-shaped, aerobic and reddish-pigmented strain, designated HME8442(T), was isolated from a mesotrophic artificial lake. The strain grew optimally at 30 °C and pH 7 on R2A agar. The major fatty acid was iso-C15 : 0.
View Article and Find Full Text PDFInt J Syst Evol Microbiol
October 2009
Environmental and Molecular Microbiology Lab., Department of Biological Sciences, KAIST, 335 Gwahangno, Yuseong-gu, Daejeon 305-701, Republic of Korea.
Six Gram-negative, non-gliding, rod-shaped bacterial strains isolated from freshwater sediment were subjected to polyphasic analyses to determine their taxonomic positions. Analysis of the 16S rRNA gene sequences of the six strains revealed that they represent two separate genomic species in a new lineage within the phylum Bacteroidetes, related to members of the family 'Chitinophagaceae', in which they were most closely related to members of the genus Terrimonas (93.4-90.
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