Ecologists often view community assembly as a process involving the dispersal of species from a static regional species pool followed by environmental filtering to establish the local community. This conceptual framework ignores the dynamic nature of species pools and fails to recognize that communities are assembled by processes operating over a vast range of temporal and spatial scales. Species pool richness and composition are influenced by metacommunity dynamics over short timescales and by speciation, extinction, and dispersal over long timescales. We suggest that a stronger focus on the geography of speciation, the formation of secondary sympatry, and the feedback between local and regional processes is needed to fully understand community assembly and the importance of dynamic species pools.
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http://dx.doi.org/10.1016/j.tree.2015.02.008 | DOI Listing |
Mol Plant
January 2025
State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, School of Agriculture, Yunnan University, Kunming 650540, China; Southwest United Graduate School,Kunming 650500, China. Electronic address:
Potato is the world's most important nongrain crop. Here, we report that 29 genomes from Petota and Etuberosum sections were de novo assembled, and that 248 accessions of wild potatoes, landraces and modern cultivars were re-sequenced at > 25× depth to assess genetic diversity within the Petota section. Subsequently, a graph-based pangenome was constructed by using DM8.
View Article and Find Full Text PDFEnviron Microbiol
January 2025
Thermophile Research Unit, Te Aka Mātuatua, School of Science, Te Whare Wānanga o Waikato, University of Waikato, Hamilton, Aotearoa-New Zealand.
Active geothermal systems are relatively rare in Antarctica and represent metaphorical islands ideal to study microbial dispersal. In this study, we tested the macro-ecological concept that high dispersal rates result in communities being dominated by either habitat generalists or specialists by investigating the microbial communities on four geographically separated geothermal sites on three Antarctic volcanoes (Mts. Erebus, Melbourne, and Rittman).
View Article and Find Full Text PDFComput Biol Med
January 2025
Turku Bioscience Centre, University of Turku and Åbo Akademi University, FI-20520, Turku, Finland; Institute of Biomedicine, University of Turku, FI-20520, Turku, Finland. Electronic address:
With advances in sequencing technologies, the use of high-throughput sequencing to characterize microbial communities is becoming increasingly feasible. However, metagenomic assembly poses computational challenges in reconstructing genes and organisms from complex samples. To address this issue, we introduce a new concept called Adaptive Sequence Alignment (ASA) for analyzing metagenomic DNA sequence data.
View Article and Find Full Text PDFPLoS One
January 2025
Instituto Tecnológico de Tlajomulco, Tecnológico Nacional de México, Tecnológico Nacional de México, Circuito Metropolitano Sur, Tlajomulco de Zúñiga, Jalisco, Mexico.
The community assembly of arbuscular mycorrhizal fungi (AMF) in the rhizosphere results from the recruitment and selection of different AMF species with different functional traits. The aim of this study was to analyze the relationship between biotic and abiotic factors and the AMF community assembly in the rhizosphere of four secondary vegetation (SV) plant species in a temperate forest. We selected four sites at two altitudes, and we marked five individuals per plant species at each site.
View Article and Find Full Text PDFPlant J
January 2025
Unit of Aromatic and Medicinal Plants, Newe Ya'ar Research Center, Volcani Institute, Ramat-Yishay, Israel.
Basil, Ocimum basilicum L., is a widely cultivated aromatic herb, prized for its culinary and medicinal uses, predominantly owing to its unique aroma, primarily determined by eugenol for Genovese cultivars or methyl chavicol for Thai cultivars. To date, a comprehensive basil reference genome has been lacking, with only a fragmented draft available.
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