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Genome sequence of Trichoderma virens FT-333 from tropical marine climate. | LitMetric

Genome sequence of Trichoderma virens FT-333 from tropical marine climate.

FEMS Microbiol Lett

Laboratory of Molecular Genetics, Institute of Biotechnology, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan Translational Center for Marine Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan Agriculture Biotechnology Research Center, National Cheng Kung University, Tainan 70101, Taiwan University Center of Bioscience and Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan Research Center of Ocean Environment and Technology, National Cheng Kung University, Tainan 70101, Taiwan.

Published: April 2015

AI Article Synopsis

  • Environmental factors can influence changes in the fungal genome over time, as shown in this study on Trichoderma virens FT-333, a biocontrol fungus from a tropical marine environment.
  • The genome of FT-333 is approximately 38.6 million base pairs and contains 12,751 proteins, with significant findings related to its secretion functions.
  • Compared to other Trichoderma species, FT-333 exhibits variability in the gene copy numbers associated with defense mechanisms and nutrient utilization.

Article Abstract

Environmental factors can cause changes in the content of the fungal genome during evolution. In this study, a fungus used as a biocontrol agent, Trichoderma virens FT-333 (from a tropical marine climate) has been isolated. The genome (38.6 Mbp; GC content, 49.43%) has a total of 12,751 proteins. Gene ontology terms (cellular component and molecular function) and KEGG analyses demonstrated the importance of the secretion function in FT-333. Compared to the other Trichoderma species, copy number of genes related to defense and nutrient utilization was variable.

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Source
http://dx.doi.org/10.1093/femsle/fnv036DOI Listing

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