Focused-ion-beam scanning electron microscopy (FIB-SEM) has become an essential tool for studying neural tissue at resolutions below 10 nm × 10 nm × 10 nm, producing data sets optimized for automatic connectome tracing. We present a technical advance, ultrathick sectioning, which reliably subdivides embedded tissue samples into chunks (20 μm thick) optimally sized and mounted for efficient, parallel FIB-SEM imaging. These chunks are imaged separately and then 'volume stitched' back together, producing a final three-dimensional data set suitable for connectome tracing.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4382383PMC
http://dx.doi.org/10.1038/nmeth.3292DOI Listing

Publication Analysis

Top Keywords

connectome tracing
8
ultrastructurally smooth
4
smooth thick
4
thick partitioning
4
partitioning volume
4
volume stitching
4
stitching large-scale
4
large-scale connectomics
4
connectomics focused-ion-beam
4
focused-ion-beam scanning
4

Similar Publications

Thalamo-insular cortex connections in the rat and human.

Neurosci Lett

December 2024

Department of Anatomy, Koç University, School of Medicine, Istanbul, Turkey. Electronic address:

The insular cortex (ICx) has a role in large a variety of functions. Thalamus plays an important role in modulating cortical functions. The present study aims to show thalamic-ICx connections using the fluoro-gold (FG) tracing method in rats and diffusion tensoring-based tractography (DTI) in humans.

View Article and Find Full Text PDF

Deciphering the connectome, the ensemble of synaptic connections that underlie brain function, is a central goal of neuroscience research. Here we report the in vivo mapping of connections between presynaptic and postsynaptic partners in zebrafish, by adapting the trans-Tango genetic approach that was first developed for anterograde transsynaptic tracing in Drosophila. Neural connections were visualized between synaptic partners in larval retina, brain and spinal cord and followed over development.

View Article and Find Full Text PDF
Article Synopsis
  • The anterior cingulate cortex (ACC) plays a vital role in pain perception, emotion, and cognition, and is connected to various brain regions.
  • A study utilized a rabies virus-based tracing method and advanced imaging techniques to map connections to the ACC in adult mice, revealing new insights into its network.
  • The findings identified direct monosynaptic inputs from key brain structures, helping understand the anatomical basis of the ACC's role in pain, memory, and cognition.
View Article and Find Full Text PDF

The brainstem is a fundamental component of the central nervous system, yet it is typically excluded from in vivo human brain mapping efforts, precluding a complete understanding of how the brainstem influences cortical function. In this study, we used high-resolution 7-Tesla functional magnetic resonance imaging to derive a functional connectome encompassing cortex and 58 brainstem nuclei spanning the midbrain, pons and medulla. We identified a compact set of integrative hubs in the brainstem with widespread connectivity with cerebral cortex.

View Article and Find Full Text PDF

The superficial white matter (SWM) consists of numerous short-range association fibers connecting adjacent and nearby gyri and plays an important role in brain function, development, aging, and various neurological disorders. Diffusion MRI (dMRI) tractography is an advanced imaging technique that enables in vivo mapping of the SWM. However, detailed imaging of the small, highly-curved fibers of the SWM is a challenge for current clinical and research dMRI acquisitions.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!