Absorption and Raman spectra of spheroidene dissolved in various organic solvents and bound to peripheral light-harvesting LH2 complexes from photosynthetic purple bacteria Rhodobacter (Rba.) sphaeroides 2.4.1 were measured. The results showed that the peak energies of absorption and C-C and C=C stretching Raman lines are linearly proportional to the polarizability of solvents, as has already been reported. When comparing these results with those measured on LH2 complexes, it was confirmed that spheroidene is surrounded by a media with high polarizability. However, the change in the spectral width of the Raman lines, which reflect vibrational decay time, cannot be explained simply by a similar dependence of solvent polarizability. The experimental results were analyzed using a potential theoretical model. Consequently, a systematic change in the Raman line widths in the ground state can be satisfactorily explained as a function of the viscosity of the surrounding media. Even when the absorption peaks appear at the same energy, the vibrational decay time of spheroidene in the LH2 complexes is approximately 15-20 % slower than that in organic solvents.
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http://dx.doi.org/10.1007/s11120-015-0095-z | DOI Listing |
J Chem Theory Comput
December 2024
Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 3, 9747 AG Groningen, The Netherlands.
We present the implementation of the time-domain multichromophoric fluorescence resonant energy transfer (TC-MCFRET) approach in the numerical integration of the Schrödinger equation (NISE) program. This method enables the efficient simulation of incoherent energy transfer between distinct segments within large and complex molecular systems, such as photosynthetic complexes. Our approach incorporates a segmentation protocol to divide these systems into manageable components and a modified thermal correction to ensure detailed balance.
View Article and Find Full Text PDFACS Omega
December 2024
Department of Chemistry, Panskura Banamali College, Panskura RS, West Bengal 721152, India.
In this study, a tetradentate Schiff-base ligand (HL), synthesized by the condensation of ethylenediamine with 2-hydroxy-3-methoxy-5-methylbenzaldehyde, was reacted with either manganese salts or manganese salts in the presence of various pseudohalides in methanol. This reaction resulted in the formation of five mononuclear Mn complexes: [Mn(L)(HO)](NO)·1/2HO·1/2CHOH (), [Mn(L)(HO)](ClO)·HO (), [Mn(L)(N)(HO)]·1/3HO (), [Mn(L)(NCS)(HO)] (), and [Mn(L)(HO)](dca) () (where dca is dicyanamide ion). X-ray crystallography revealed that the Mn centers adopt a hexa-coordinate pseudo-octahedral geometry, where the equatorial plane is constructed with phenoxo oxygen and imine nitrogen atoms from the Schiff base ligand, while the axial positions are occupied by water molecules or a combination of water and pseudohalides.
View Article and Find Full Text PDFCommun Biol
December 2024
Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, China.
Purple phototrophic bacteria produce two kinds of light-harvesting complexes that function to capture and transmit solar energy: the core antenna (LH1) and the peripheral antenna (LH2). The apoproteins of these antennas, encoded respectively by the genes pufBA and pucBA within and outside the photosynthetic gene cluster, respectively, exhibit conserved amino acid sequences and structural topologies suggesting they were derived from a shared ancestor. Here we present the structures of two photosynthetic complexes from Roseospirillum (Rss.
View Article and Find Full Text PDFStructure
December 2024
Bach Institute of Biochemistry, Research Center of Biotechnology Russian Academy of Sciences, Leninsky pr-t, 33, bld. 2, Moscow 119071, Russia. Electronic address:
Bacteria with the simplest system for solar energy absorption and conversion use various types of light-harvesting complexes for these purposes. Light-harvesting complex 2 (LH2), an important component of the bacterial photosynthetic apparatus, has been structurally well characterized among purple non-sulfur bacteria. In contrast, so far only one high-resolution LH2 structure from sulfur bacteria is known.
View Article and Find Full Text PDFJ Phys Chem Lett
December 2024
Department of Physics, University of Michigan, 450 Church St., Ann Arbor, Michigan 48109, United States.
In recent years, action-detected ultrafast spectroscopies have gained popularity offering distinct advantages over their coherently detected counterparts, such as spatially resolved and operando measurements with high sensitivity. However, there are also fundamental limitations connected to the process of signal generation in action-detected experiments. Here we perform fluorescence-detected two-dimensional electronic spectroscopy (F-2DES) of the light-harvesting II (LH2) complex from purple bacteria.
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