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Identification of reference genes in human myelomonocytic cells for gene expression studies in altered gravity. | LitMetric

Identification of reference genes in human myelomonocytic cells for gene expression studies in altered gravity.

Biomed Res Int

Institute of Anatomy, Faculty of Medicine, University of Zurich, Winterthurerstraße 190, 8057 Zurich, Switzerland ; Department of Machine Design, Engineering Design and Product Development, Institute of Mechanical Engineering, Otto-von-Guericke-University Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Germany ; Study Group "Magdeburger Arbeitsgemeinschaft für Forschung unter Raumfahrt- und Schwerelosigkeitsbedingungen" (MARS), Otto-von-Guericke-University Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Germany ; Zurich Center for Integrative Human Physiology (ZIHP), University of Zurich, Winterthurerstraße 190, 8057 Zurich, Switzerland.

Published: October 2015

AI Article Synopsis

  • Gene expression studies are crucial for understanding molecular mechanisms and require stable reference genes for accurate analysis.
  • Common recommendations for these reference genes were developed under normal gravity, raising questions about their effectiveness in altered gravity conditions.
  • The study identified eight stable reference genes (ALB, B4GALT6, GAPDH, HMBS, YWHAZ, ABCA5, ABCA9, and ABCC1) that maintain consistent expression across various gravitational environments, making them suitable for gene expression standardization in such studies.

Article Abstract

Gene expression studies are indispensable for investigation and elucidation of molecular mechanisms. For the process of normalization, reference genes ("housekeeping genes") are essential to verify gene expression analysis. Thus, it is assumed that these reference genes demonstrate similar expression levels over all experimental conditions. However, common recommendations about reference genes were established during 1 g conditions and therefore their applicability in studies with altered gravity has not been demonstrated yet. The microarray technology is frequently used to generate expression profiles under defined conditions and to determine the relative difference in expression levels between two or more different states. In our study, we searched for potential reference genes with stable expression during different gravitational conditions (microgravity, normogravity, and hypergravity) which are additionally not altered in different hardware systems. We were able to identify eight genes (ALB, B4GALT6, GAPDH, HMBS, YWHAZ, ABCA5, ABCA9, and ABCC1) which demonstrated no altered gene expression levels in all tested conditions and therefore represent good candidates for the standardization of gene expression studies in altered gravity.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4309215PMC
http://dx.doi.org/10.1155/2015/363575DOI Listing

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