The reduction of gene expression variability from single cells to populations follows simple statistical laws.

Genomics

Institute for Advanced Biosciences, Keio University, 14-1 Baba-cho, 997-0035 Tsuruoka, Japan; Systems Biology Program, Graduate School of Media and Governance, Keio University, 5322 Endo, 252-0882 Fujisawa, Japan. Electronic address:

Published: March 2015

AI Article Synopsis

Article Abstract

Recent studies on single cells and population transcriptomics have revealed striking differences in global gene expression distributions. Single cells display highly variable expressions between cells, while cell populations present deterministic global patterns. The mechanisms governing the reduction of transcriptome-wide variability over cell ensemble size, however, remain largely unknown. To investigate transcriptome-wide variability of single cells to different sizes of cell populations, we examined RNA-Seq datasets of 6 mammalian cell types. Our statistical analyses show, for each cell type, increasing cell ensemble size reduces scatter in transcriptome-wide expressions and noise (variance over square mean) values, with corresponding increases in Pearson and Spearman correlations. Next, accounting for technical variability by the removal of lowly expressed transcripts, we demonstrate that transcriptome-wide variability reduces, approximating the law of large numbers. Subsequent analyses reveal that the entire gene expressions of cell populations and only the highly expressed portion of single cells are Gaussian distributed, following the central limit theorem.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ygeno.2014.12.007DOI Listing

Publication Analysis

Top Keywords

single cells
20
cell populations
12
transcriptome-wide variability
12
gene expression
8
variability single
8
cell ensemble
8
ensemble size
8
cell
7
cells
6
variability
5

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!