Carreira alkynylations with paraformaldehyde. a mild and convenient protocol for the hydroxymethylation of complex base-sensitive terminal acetylenes via alkynylzinc triflates.

Org Lett

The School of Chemistry & Chemical Engineering and the Centre for Cancer Research and Cell Biology (CCRCB), The Queen's University Belfast, Stranmillis Road, Belfast BT9 5AG, Northern Ireland, UK.

Published: January 2015

A new synthetic protocol for the hydroxymethylation of terminal acetylenes is described that involves stoichiometric Carreira alkynylation with solid paraformaldehyde (HO[CH2O]nH) in PhMe at 60 °C. Significantly, the method can be successfully applied on acetylenes that possess base-sensitive ester functionality and heterocyclic rings that readily undergo metalation. While N-methylephedrine (NME) is generally the best Zn(OTf)2-coordinating ligand for promoting hydroxymethylation, TMEDA can serve as a replacement.

Download full-text PDF

Source
http://dx.doi.org/10.1021/ol503222jDOI Listing

Publication Analysis

Top Keywords

protocol hydroxymethylation
8
terminal acetylenes
8
carreira alkynylations
4
alkynylations paraformaldehyde
4
paraformaldehyde mild
4
mild convenient
4
convenient protocol
4
hydroxymethylation complex
4
complex base-sensitive
4
base-sensitive terminal
4

Similar Publications

Alzheimer's disease-specific transcriptomic and epigenomic changes in the tryptophan catabolic pathway.

Alzheimers Res Ther

November 2024

Department of Psychiatry and Neuropsychology, Faculty of Health, Medicine and Life Sciences (FHML), Mental Health and Neuroscience Research Institute (MHeNs) and European Graduate School of Neuroscience (EURON), Maastricht University, Maastricht, 6211 LK, the Netherlands.

Background: Neurodegenerative disorders, including Alzheimer's disease (AD), have been linked to alterations in tryptophan (TRP) metabolism. However, no studies to date have systematically explored changes in the TRP pathway at both transcriptional and epigenetic levels. This study aimed to investigate transcriptomic, DNA methylomic (5mC) and hydroxymethylomic (5hmC) changes within genes involved in the TRP and nicotinamide adenine dinucleotide (NAD) pathways in AD, using three independent cohorts.

View Article and Find Full Text PDF
Article Synopsis
  • RNA modifications are crucial for cellular regulation, influencing gene expression and protein function, particularly through processes like cytosine hydroxymethylation driven by the TET enzyme.
  • Traditional methods for identifying 5-hydroxymethylcytosine (5hmC) are costly and inefficient, prompting the introduction of XGB5hmC, a machine learning algorithm that utilizes XGBoost and enhanced residue-based features for better identification.
  • The XGBoost model showed impressive performance metrics, achieving nearly 90% accuracy and improving interpretability through SHAP-based feature selection, indicating a significant advancement in RNA modification analysis that could benefit medical assessments and treatments.
View Article and Find Full Text PDF

Electrophotocatalytic Hydroxymethylation of Azaarenes with Methanol.

Org Lett

September 2024

Instituto de Síntesis Orgánica (ISO) and Departamento de Química Orgánica, Universidad de Alicante, 03080 San Vicente del Raspeig, Spain.

The merging of electrochemistry and photocatalysis allowed the required selectivity for the hydroxymethylation of functionalized azaarenes with methanol, including bioactive substrates. The two electrophotocatalytic protocols developed in this work address this transformation, using nontoxic and readily available reagents under mild reaction conditions with electricity as the only "sacrificial oxidant".

View Article and Find Full Text PDF

Background: Circulating tumor DNA (ctDNA) analysis has been applied in cancer diagnostics including lung cancer. Specifically for the early detection purpose, various modalities of ctDNA analysis have demonstrated their potentials. Such analyses have showed diverse performance across different studies.

View Article and Find Full Text PDF
Article Synopsis
  • The text discusses the importance of analyzing genome-wide epigenomic changes, especially DNA methylation and hydroxymethylation, for advancing personalized medicine and enhancing biochemical tests.* -
  • It introduces a detailed protocol for preparing sequencing libraries that can distinguish between different forms of cytosine modifications, particularly using whole-genome bisulfite sequencing (WGBS) and an additional oxidation step for quantitative analysis.* -
  • The protocol has been tested on various human and plant samples, demonstrating consistent and reliable outcomes, along with guidance on data analysis using bioinformatics tools.*
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!