The UCSC Cancer Genomics Browser: update 2015.

Nucleic Acids Res

Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA

Published: January 2015

The UCSC Cancer Genomics Browser (https://genome-cancer.ucsc.edu/) is a web-based application that integrates relevant data, analysis and visualization, allowing users to easily discover and share their research observations. Users can explore the relationship between genomic alterations and phenotypes by visualizing various -omic data alongside clinical and phenotypic features, such as age, subtype classifications and genomic biomarkers. The Cancer Genomics Browser currently hosts 575 public datasets from genome-wide analyses of over 227,000 samples, including datasets from TCGA, CCLE, Connectivity Map and TARGET. Users can download and upload clinical data, generate Kaplan-Meier plots dynamically, export data directly to Galaxy for analysis, plus generate URL bookmarks of specific views of the data to share with others.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383911PMC
http://dx.doi.org/10.1093/nar/gku1073DOI Listing

Publication Analysis

Top Keywords

cancer genomics
12
genomics browser
12
ucsc cancer
8
data
5
browser update
4
update 2015
4
2015 ucsc
4
browser https//genome-cancerucscedu/
4
https//genome-cancerucscedu/ web-based
4
web-based application
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!