Hydrogen-bond structure and anharmonicity in croconic acid.

Phys Chem Chem Phys

ISIS Facility, STFC Rutherford Appleton Laboratory, Didcot, Oxfordshire, OX11 0QX, UK.

Published: December 2014

First-principles molecular dynamics simulations and neutron-scattering experiments have been employed to investigate the structure and underlying vibrational motions in croconic acid as a function of temperature over the range 4-400 K. Calculated hydroxyl-bond distances were within 4% of the experimentally determined bond lengths. Temperature-dependent structures have been explored using large-scale molecular dynamics simulations. From the calculated radial distribution functions, it is found that medium-range order associated with O···H and O···O correlations are affected by an increase in temperature, yet the characteristic long-range layered structure of this material remains unaltered. Hydrogen-bond anharmonicity has been assessed from the molecular dynamics simulations, showing a red shift of ca. 50 cm(-1) of the O-H stretch frequency relative to quasi-harmonic results. This shift shows the importance of anharmonic corrections on hydrogen bonds in solid croconic acid.

Download full-text PDF

Source
http://dx.doi.org/10.1039/c4cp03713hDOI Listing

Publication Analysis

Top Keywords

croconic acid
12
molecular dynamics
12
dynamics simulations
12
hydrogen-bond structure
4
structure anharmonicity
4
anharmonicity croconic
4
acid first-principles
4
first-principles molecular
4
simulations neutron-scattering
4
neutron-scattering experiments
4

Similar Publications

Given the rapid growth of the nuclear sector, effective treatment of radioactive iodine is critical. Herein, we report the synthesis and the iodine adsorption properties of croconic acid (CTPB) and squaric acid (STPB) containing π-conjugated novel zwitterionic conjugated porous polymers (CPPs). The CPPs have been synthesized through a condensation reaction of tris(4-aminophenyl)benzene with croconic acid or squaric acid in high yields (~95 %).

View Article and Find Full Text PDF

Lysine crotonylation (Kcr) is a recently discovered histone acylation modification that is closely associated with gene expression, cell proliferation, and the maintenance of stem cell pluripotency and indicates the transcriptional activity of genes and the regulation of various biological processes. During cell culture, the introduction of exogenous croconic acid disodium salt (Nacr) has been shown to modulate intracellular Kcr levels. Although research on Kcr has increased, its role in cell growth and proliferation and its potential regulatory mechanisms remain unclear compared to those of histone methylation and acetylation.

View Article and Find Full Text PDF

Chemresistive Detection of NO of ppb Level in Humid Air at 350 K Using Azo-Spaced Polycroconamide.

ACS Sens

January 2024

College of Chemistry Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China.

Organic molecules are of great interest for gas sensing applications. However, achieving high-performance gas sensors with high sensitivity, fast response, low consumption, and workability in humid conditions is still challenging. Herein, we report the rational design and synthesis of an ion-in-conjugation polymer, PADC (poly-4,4'-azodianiline-croconamide), obtained by the condensation of croconic acid with 4-4'diaminoazobenzene for gas sensing under humid conditions.

View Article and Find Full Text PDF

A croconic acid-derived narrow band gap conjugated microporous polymer.

Chem Commun (Camb)

July 2023

Department of Chemistry, IIT Dharwad, Dharwad, Karnataka 580 011, India.

Croconic acid, a novel highly electron-deficient building block, was introduced into a conjugated microporous polymer (CTPA). The CMP possesses strong donor-acceptor interactions, which resulted in near-IR absorption (red edge ∼1350 nm), a narrow bandgap (<1 eV) and high electrical conductivity upon doping (0.1 S m).

View Article and Find Full Text PDF

Water-solubility croconic acid-bisindole dye with morpholine ring for tumor NIRF/PA imaging and photothermal therapy activated by lysosome pH-response.

J Photochem Photobiol B

August 2023

Guangdong Provincial Key Laboratory of New Drug Screening, School of Pharmaceutical Sciences, Southern Medical University, Guangzhou 510515, PR China. Electronic address:

A novel croconic acid-bisindole dye CR-630 with a morpholine ring showed good water-solubility and obvious lysosome-targeting. The protonation of the nitrogen atom in the indole and lysosome-targeting of morpholine ring let it exhibit stronger pH-responsive NIR/PA imaging and photothermal effect in the lysosome acidic microenvironment (pH 4.0-5.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!