Mechanical transition in a highly stretched and torsionally constrained DNA.

Phys Rev E Stat Nonlin Soft Matter Phys

Institute of Physics, Faculty of Physics, Astronomy and Informatics, Nicolaus Copernicus University, Grudziądzka 5, 87-100 Toruń, Poland.

Published: February 2014

We show results of our high force (up to 1.8 nN) atomic force microscopy force spectroscopy measurements of a double stranded DNA. We have found that the force spectra of torsionally constrained molecules display a small plateau occurring at a force of approximately 1 nN. This transition is absent in molecules with rotational freedom. Based on all-atom molecular dynamics simulations, we suggest that this plateau is a result of reducing the diameter of a double helix through extreme stretching. The simulation suggests that the molecule is forced into a form resembling an underwound P-DNA, with bases protruding outside of the backbones. These results broaden our understanding of the fundamental aspects of DNA nanomechanics.

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http://dx.doi.org/10.1103/PhysRevE.89.020701DOI Listing

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