We show results of our high force (up to 1.8 nN) atomic force microscopy force spectroscopy measurements of a double stranded DNA. We have found that the force spectra of torsionally constrained molecules display a small plateau occurring at a force of approximately 1 nN. This transition is absent in molecules with rotational freedom. Based on all-atom molecular dynamics simulations, we suggest that this plateau is a result of reducing the diameter of a double helix through extreme stretching. The simulation suggests that the molecule is forced into a form resembling an underwound P-DNA, with bases protruding outside of the backbones. These results broaden our understanding of the fundamental aspects of DNA nanomechanics.
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http://dx.doi.org/10.1103/PhysRevE.89.020701 | DOI Listing |
Front Bioeng Biotechnol
October 2024
Department (Hospital) of Stomatology, Lanzhou University, Lanzhou, China.
Traditionally, extracting single, flat- or curved-rooted teeth through twisting is unfeasible. However, our clinical practice suggests that such teeth can be extracted efficiently through moderate twisting in a minimally invasive manner. Given the lack of studies on biomechanics of the tooth-periodontal ligament (PDL) complex during torsion, which has further constrained its application, we assessed the feasibility of the torsion method for extracting single-rooted teeth and evaluated its minimally invasive potential.
View Article and Find Full Text PDFJ Magn Reson
November 2024
Department of Chemistry and Francis Bitter Magnet Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, United States. Electronic address:
In magic angle spinning (MAS) experiments involving uniformly C/N labeled proteins, C-C and C-N dipolar recoupling experiments are now routinely used to measure direct dipole-dipole couplings that constrain distances and torsion angles and determine molecular structures. When the distances are short (<4 Å), the direct couplings dominate the evolution of the spin system, and the C-C and C-N J-couplings (scalar couplings) are ignored. However, for structurally interesting >4 Å distances, the dipolar and J-couplings are generally of comparable magnitude, and the variation in J must be included in order to optimize the precision of the experiment.
View Article and Find Full Text PDFBiochemistry
November 2024
Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556-5670, United States.
An emerging NMR method, analysis, has been applied to investigate context effects on the conformational properties of several human milk oligosaccharides (HMOs). The model of the β-(1→4) linkage in the disaccharide, methyl β-lactoside (MeL), was compared to those obtained for the same linkage in the HMO trisaccharides, methyl 2'-fucosyllactoside (Me2'FL) and methyl 3-fucosyllactoside (Me3FL), and in the tetrasaccharide, methyl 2',3-difucosyllactoside (Me2',3DFL). analysis revealed significant context effects on the mean values and circular standard deviations (CSDs) of the psi (ψ) torsion angles in these linkages.
View Article and Find Full Text PDFJ Phys Chem B
October 2024
International Tomography Center, SB RAS, and Novosibirsk State University, Novosibirsk 630090, Russia.
We studied the intersystem crossing (ISC) property of red-light absorbing heavy atom-free dihydronaphtho[]-fused Bodipy derivatives (with phenyl group attached at the lower rim via ethylene bridge, taking constrained geometry, i.e., and the half-oxidized product ) and dispiroflourene[]-fused Bodipy () that have a twisted π-conjugated framework.
View Article and Find Full Text PDFHeliyon
July 2024
School of Intelligent Manufacturing, Chengdu Technological University, Chengdu, 610031, PR China.
Carbon fiber reinforced composite structures have been a research hotspot in recent years, with 9 specimens designed for static tests under bending and torsion loads of CFRP concrete filled steel tubes. The torque angle (-) curve was studied from an experimental perspective. Subsequently, a reasonable finite element model was established using ABAQUS software.
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