The longhorned beetle genus Elytroleptus Dugés (Cerambycidae: Cerambycinae: Trachyderini) is revised to include fifteen species. One new species is described: E. quadricostatus sp. nov. Grzymala & Miller. Three new synonymies are proposed: E. dichromaticus Linsley, 1961 syn. n. = E. divisus (LeConte, 1884); E. luteicollis Skiles & Chemsak, 1982 syn. n. = E. ignitus (LeConte, 1884); E. peninsularis Hovore, 1988 syn. n. = E. immaculipennis Knull, 1935. A lectotype is designated for E. scabricollis Bates, 1892. The genus is generally distributed throughout the southwestern United States, Mexico, and Central America (Guatemala, Honduras, Nicaragua, and Costa Rica) with one species, E. floridanus (LeConte), extending the range to the northeastern and southeastern United States. Elytroleptus is of interest to both naturalists and taxonomists as several species are lycid (Coleoptera: Lycidae) mimics with three recorded as predaceous on their own models (E. apicalis (LeConte), E. ignitus (LeConte), E. limpianus Skiles & Chemsak). Descriptions of all species are provided with an emphasis on clarifying intraspecific polychromatic variation. A key to the adult species, distribution maps, habitus images, and illustrations of mouthparts and genitalia are presented. A phylogenetic analysis of Elytroleptus is performed using twenty-one adult morphological characters. Six most parsimonious trees (L = 59; CI = 50; RI = 75) are recovered. Results suggest that Elytroleptus is monophyletic and is supported by four unambiguous synapomorphies.
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http://dx.doi.org/10.11646/zootaxa.3659.1.1 | DOI Listing |
Methods Mol Biol
January 2025
Centro Nacional de Análisis Genómico, Barcelona, Spain.
The recent development of genetic lineage recorders, designed to register the genealogical history of cells using induced somatic mutations, has opened the possibility of reconstructing complete animal cell lineages. To reconstruct a cell lineage tree from a molecular recorder, it is crucial to use an appropriate reconstruction algorithm. Current approaches include algorithms specifically designed for cell lineage reconstruction and the repurposing of phylogenetic algorithms.
View Article and Find Full Text PDFMethods Mol Biol
January 2025
Sorbonne Université, Institut du Cerveau (Paris Brain Institute) ICM, Inserm, CNRS, Hôpital de la Pitié Salpêtrière, Paris, France.
Somatic mosaic variants, and especially somatic single nucleotide variants (sSNVs), occur in progenitor cells in the developing human brain frequently enough to provide permanent, unique, and cumulative markers of cell divisions and clones. Here, we describe an experimental workflow to perform lineage studies in the human brain using somatic variants. The workflow consists in two major steps: (1) sSNV calling through whole-genome sequencing (WGS) of bulk (non-single-cell) DNA extracted from human fresh-frozen tissue biopsies, and (2) sSNV validation and cell phylogeny deciphering through single nuclei whole-genome amplification (WGA) followed by targeted sequencing of sSNV loci.
View Article and Find Full Text PDFMethods Mol Biol
January 2025
Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Measurements of cell phylogeny based on natural or induced mutations, known as lineage barcodes, in conjunction with molecular phenotype have become increasingly feasible for a large number of single cells. In this chapter, we delve into Quantitative Fate Mapping (QFM) and its computational pipeline, which enables the interrogation of the dynamics of progenitor cells and their fate restriction during development. The methods described here include inferring cell phylogeny with the Phylotime model, and reconstructing progenitor state hierarchy, commitment time, population size, and commitment bias with the ICE-FASE algorithm.
View Article and Find Full Text PDFMethods Mol Biol
January 2025
Allen Discovery Center for Lineage Tracing and Department of Laboratory Medicine & Pathology, University of Washington, Seattle, WA, USA.
Mutations are acquired frequently, such t`hat each cell's genome inscribes its history of cell divisions. Loss of heterozygosity (LOH) accumulates throughout the genome, offering large encoding capacity for phylogenetic inference of cell lineage.In this chapter, we demonstrate a method, using single-cell RNA sequencing, for reconstructing cell lineages from inferred LOH events in a Bayesian manner, annotating the lineage with cell phenotypes, and marking developmental time points based on X-chromosome inactivation.
View Article and Find Full Text PDFMicrobiol Resour Announc
December 2024
China National Center for Bioinformation, Beijing, China.
We conducted metagenomic sequencing on a stool sample collected from urban-dwelling and obtained a metagenome-assembled genome of . Phylogenetic analysis revealed that this strain is closely related to the one isolated from dogs, forming a distinct clade separate from the reference genome.
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