Virtual move Monte Carlo is a cluster algorithm which was originally developed for strongly attractive colloidal, molecular, or atomistic systems in order to both approximate the collective dynamics and avoid sampling of unphysical kinetic traps. In this paper, we present the algorithm in the form, which selects the moving cluster through a wider class of virtual states and which is applicable to general pairwise interactions, including hard-core repulsion. The newly proposed way of selecting the cluster increases the acceptance probability by up to several orders of magnitude, especially for rotational moves. The results have their applications in simulations of systems interacting via anisotropic potentials both to enhance the sampling of the phase space and to approximate the dynamics.
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http://dx.doi.org/10.1103/PhysRevE.90.033302 | DOI Listing |
Epidemiology
March 2025
From the Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA.
The analysis of perinatal studies is complicated by twins and other multiple births even when multiples are not the exposure, outcome, or a confounder of interest. In analyses of infant outcomes restricted to live births, common approaches to handling multiples include restriction to singletons, counting outcomes at the pregnancy level (i.e.
View Article and Find Full Text PDFToxicol Rep
June 2025
Applied Biomedical Research Center, Mashhad University of Medical Sciences, Mashhad, Iran.
The present investigation assessed the risk of dietary exposure to four mycotoxins, namely aflatoxin B1 (AFB1), aflatoxin G1 (AFG1), ochratoxin A (OTA), and patulin (PAT) via fruit juice consumption for Iranian consumers. In 96 fruit juice samples obtained from Iran market, mycotoxins levels were determined using liquid chromatography-tandem mass spectrometry. Also, probabilistic health risk assessment was conducted in terms of tolerable daily intake percentage (%TDI) and under cancer risk scenarios.
View Article and Find Full Text PDFAppl Psychol Meas
January 2025
Wright State University, Dayton, OH, USA.
This study compared maximum a posteriori (MAP), expected a posteriori (EAP), and Markov Chain Monte Carlo (MCMC) approaches to computing person scores from the Multi-Unidimensional Pairwise Preference Model. The MCMC approach used the No-U-Turn sampling (NUTS). Results suggested the EAP with fully crossed quadrature and the NUTS outperformed the others when there were fewer dimensions.
View Article and Find Full Text PDFHeliyon
January 2025
Department of Mathematical Sciences, College of Science, Princess Nourah bint Abdulrahman University, P.O.Box 84428, Riyadh, 11671, Saudi Arabia.
Circular distributions within the radians range describe two-dimensional directions by mapping points onto a unit circle. These distributions are vital in diverse fields such as medicine, ecology, and environmental studies, where measurements are expressed in terms of angles. However, when these distributions involve measuring angles within the radians range, they constitute axial or semi-circular data instead of circular data.
View Article and Find Full Text PDFBiophys J
January 2025
Div. of Biology, IISER Pune, Dr. Homi Bhabha Road, Pashan, Pune 411008, India. Electronic address:
The polymerization of cytoskeletal filaments is regulated by both biochemical pathways, as well as physical factors such as crowding. The effect of crowding in vivo emerges from the density of intracellular components. Due to the complexity of the intracellular environment, most studies are based on either in vitro reconstitution or theory.
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