High-level ab initio calculations have been used to study the interactions between the CH3 group of CH3X (X = F, Cl, Br, CN) molecules and π-electrons. These interactions are important because of the abundance of both the CH3 groups and π-electrons in biological systems. Complexes between C2H4/C2H2 and CH3X molecules have been used as model systems. Various theoretical methods such as atoms in molecules theory, reduced density gradient analysis, and natural bond orbital analysis have been used to discern these interactions. These analyses show that the interaction of the π-electrons with the CH3X molecules leads to the formation of X-C···π carbon bonds. Similar complexes with other tetrel molecules, SiH3X and GeH3X, have also been considered.
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http://dx.doi.org/10.1021/jp507849g | DOI Listing |
Phys Chem Chem Phys
January 2025
Department of Chemistry & Biochemistry, Texas Christian University, Fort Worth, Texas 76129, USA.
A σ-hole is an electron-deficient region of positive electrostatic potential (ESP) opposite from a half-filled p orbital involved in forming a covalent bond. The σ-hole concept helps rationalize directional noncovalent interactions, known as σ-hole bonds, between covalently bonded group V-VII atoms and electron-pair donors. The magnitude and orientation of σ-holes are correlated with the strength and geometry of halogen bonds.
View Article and Find Full Text PDFJ Phys Chem A
December 2024
College of Physics and Electronics, Shandong Normal University, Jinan ,Shandong 250014 ,China.
A combined multilevel quantum mechanics and molecular mechanics approach is performed to investigate the nucleophilic substitution reactions of CN + CHX (X = F, Cl, Br, and I) by the N-side attack in aqueous solution. The water molecules are treated microscopically using an explicit SPC/E model, and the potentials of mean force are characterized by both the DFT and CCSD(T) levels of theory for the solute. Calculations demonstrate that the shielding effect of the solvent reduces the nucleophile-substrate and substrate-leaving group interactions in solution, leading to stationary point structures that are quite different from those in the gas phase.
View Article and Find Full Text PDFPhys Chem Chem Phys
November 2024
Science Faculty, University of Iceland, Dunhagi 3, 107 Reykjavík, Iceland.
Methyl radicals in their ground state (CH(X)) were created and excited by two- and one- color excitation schemes for CHBr and CHI, respectively, to record (2+1) REMPI spectra of CH for resonant transitions to the Rydberg states CH**(pA); = 3, 4. Various new and previously observed vibrational bands were identified and analyzed to gain energetic information for the Rydberg states. Particular emphasis was placed on analysis of the rotational structured spectra centered at 70 648 and 60 700 cm, due to transitions from to and for both Rydberg states, respectively.
View Article and Find Full Text PDFJ Phys Chem A
June 2023
Department of Chemistry, Faculty of Science, Kanagawa University, 2946, Tsuchiya, Hiratsuka, Kanagawa 259-1293, Japan.
The mechanisms of the ionization-induced fragmentation and H migration of methyl halides CHX (X = F, Cl, Br) have been examined by quantum mechanical and molecular dynamics methods. When CHX (X = F, Cl, Br) is vertically ionized into a divalent cation, it can obtain enough excess energy to overcome the energy barrier of subsequent reaction channels for the formation of H, H, and H species and intramolecular H migration. The product distributions of these species greatly depend on the halogen atoms.
View Article and Find Full Text PDFMolecules
October 2022
Grupo de Química Computacional y Teórica (QCT-UR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá 111221, Colombia.
The C-X bond cleavage in different methyl halides (CHX; X = Cl, Br, I) mediated by 5,6-dimethylbenzimidazole-bis(dimethylglyoximate)cobalt(II) (CoCbx) was theoretically investigated in the present work. An S2-like mechanism was considered to simulate the chemical process where the cobalt atom acts as the nucleophile and the halogen as the leaving group. The reaction path was computed by means of the intrinsic reaction coordinate method and analyzed in detail through the reaction force formalism, the quantum theory of atoms in molecules (QTAIM), and the calculation of one-electron density derived quantities, such as the source function (SF) and the spin density.
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