Function and dynamics of macromolecular complexes explored by integrative structural and computational biology.

Curr Opin Struct Biol

Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA 22908, USA; Center for Membrane Biology, University of Virginia School of Medicine, Charlottesville, VA 22908, USA; Cardiovascular Research Center, University of Virginia School of Medicine, Charlottesville, VA 22908, USA; Department of Medicine, Division of Cardiovascular Medicine, University of Virginia School of Medicine, Charlottesville, VA 22908, USA; Department of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. Electronic address:

Published: August 2014

AI Article Synopsis

  • The text discusses how combining electron microscopy (EM), X-ray crystallography, and molecular dynamics (MD) simulations can enhance our understanding of complex macromolecular structures and their dynamics.
  • It highlights two specific examples: the ribosome and the Arp2/3-actin complex, where these techniques were used to uncover functional dynamics.
  • The third example focuses on the GPCR:G protein complex, showcasing how these methods can provide insights into transmembrane signaling, underscoring the advancements in integrative structural biology.

Article Abstract

Three vignettes exemplify the potential of combining EM and X-ray crystallographic data with molecular dynamics (MD) simulation to explore the architecture, dynamics and functional properties of multicomponent, macromolecular complexes. The first two describe how EM and X-ray crystallography were used to solve structures of the ribosome and the Arp2/3-actin complex, which enabled MD simulations that elucidated functional dynamics. The third describes how EM, X-ray crystallography, and microsecond MD simulations of a GPCR:G protein complex were used to explore transmembrane signaling by the β-adrenergic receptor. Recent technical advancements in EM, X-ray crystallography and computational simulation create unprecedented synergies for integrative structural biology to reveal new insights into heretofore intractable biological systems.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6387792PMC
http://dx.doi.org/10.1016/j.sbi.2014.08.006DOI Listing

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