Quantifying the interactions in dense colloidal fluids requires a properly designed order parameter. We present a modified bond-orientational order parameter, ψ̄6, to avoid problems of the original definition of bond-orientational order parameter. The original bond-orientational order parameter can change discontinuously in time but our modified order parameter is free from the discontinuity and, thus, it is a suitable measure to quantify the dynamics of the bond-orientational ordering of the local surroundings. Here we analyze ψ̄6 in a dense driven monodisperse quasi-two-dimensional colloidal fluids where a single particle is optically trapped at the center. The perturbation by the trapped and driven particle alters the structure and dynamics of the neighboring particles. This perturbation disturbs the flow and causes spatial and temporal distortion of the bond-orientational configuration surrounding each particle. We investigate spatio-temporal behavior of ψ̄6 by a Wavelet transform that provides a time-frequency representation of the time series of ψ̄6. It is found that particles that have high power in frequencies corresponding to the inverse of the timescale of perturbation undergo distortions of their packing configurations that result in cage breaking and formation dynamics. To gain insight into the dynamic structure of cage breaking and formation of bond-orientational ordering, we compare the cage breaking and formation dynamics with the underlying dynamical structure identified by Lagrangian Coherent Structures (LCSs) estimated from the finite-time Lyapunov exponent (FTLE) field. The LCSs are moving separatrices that effectively divide the flow into distinct regions with different dynamical behavior. It is shown that the spatial distribution of the FTLE field and the power of particles in the wavelet transform have positive correlation, implying that LCSs provide a dynamic structure that dominates the dynamics of cage breaking and formation of the colloidal fluids.
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http://dx.doi.org/10.1063/1.4894866 | DOI Listing |
Nature
December 2024
Department of Biochemistry, University of Washington, Seattle, WA, USA.
Four, eight or twenty C3 symmetric protein trimers can be arranged with tetrahedral, octahedral or icosahedral point group symmetry to generate closed cage-like structures. Viruses access more complex higher triangulation number icosahedral architectures by breaking perfect point group symmetry, but nature appears not to have explored similar symmetry breaking for tetrahedral or octahedral symmetries. Here we describe a general design strategy for building higher triangulation number architectures starting from regular polyhedra through pseudosymmetrization of trimeric building blocks.
View Article and Find Full Text PDFChemistry
December 2024
School of Chemistry, University of Leeds, Woodhouse Lane, Leeds, LS2 9JT, UK.
Cage-catenanes are chemical constructs where two or more cage-like molecules or assemblies are mechanically interlocked together. We report a new class of cage-catenanes where dimeric metal-organic cage-catenanes are linked into larger assemblies through additional bridging metal chloride links. These crystalline materials are obtained from the reaction of tris(nicotinoyl)cyclotriguaiacylene (L1) with Cu(II) salts, and all feature a tetramer of cages where two {Cu(L1)(X)} cages (X=anion) are mechanically interlocked, and link to each other and to another {Cu(L1)(X)} cage-catenane through a planar, linear tetranuclear {Cu(μ-Cl)Cl} cluster.
View Article and Find Full Text PDFPLoS One
November 2024
Department of Dysphagia Rehabilitation, Division of Gerontology and Gerodontology, Graduate School of Medical and Dental Sciences, Institute of Science Tokyo, Tokyo, Japan.
Social isolation affects physical functioning owing to psychological stress. We constructed a rat model to clarify the unexplored effects of social isolation and to determine whether environmental changes as an intervention against social isolation can reduce the stress-inducing effects of social isolation on physiological factors. Eight-week-old male rats were divided into three groups: group-housed, isolated, and intervention.
View Article and Find Full Text PDFInt J Mol Sci
November 2024
Instituto Interuniversitario de Investigación de Reconocimiento Molecular y Desarrollo Tecnológico (IDM), Universitat Politècnica de València, Universitat de València, Camino de Vera s/n, 46022 Valencia, Spain.
Molecular cages are preorganized molecules with a central cavity, typically formed through the reaction of their building blocks through chemical bonds. This requires, in most cases, forming and breaking reversible bonds during the cage formation reaction pathway for error correction to drive the reaction to the cage product. In this work, we focus on both Pd-ligand and hydrazone bonds implemented in the structure of a PdL hydrazone molecular cage.
View Article and Find Full Text PDFSmall
November 2024
Department of Chemistry & ZJU-Hangzhou Global Scientific and Technological Inovation Center, Zhejiang University, Zhejiang, 311215, China.
The first experimental investigation of a porous organic cage (POC) for the challenging task of HS capture is reported. The N-containing cage molecular material, a tertiary amine POC (6FT-RCC3), demonstrates the highest HS (hydrogen sulfide) capture (record capacity) for a porous material at room temperature and atmospheric pressure (20.6 mmol HS g; 25 HS molecules per cage) combined with excellent reversibility for at least five adsorption-desorption cycles.
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