Efficiently and accurately analyzing big protein tandem mass spectrometry data sets requires robust software that incorporates state-of-the-art computational, machine learning, and statistical methods. The Crux mass spectrometry analysis software toolkit ( http://cruxtoolkit.sourceforge.net ) is an open source project that aims to provide users with a cross-platform suite of analysis tools for interpreting protein mass spectrometry data.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184452PMC
http://dx.doi.org/10.1021/pr500741yDOI Listing

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