Group-PCA for very large fMRI datasets.

Neuroimage

FMRIB (Oxford University Centre for Functional MRI of the Brain), University of Oxford, UK; Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, The Netherlands.

Published: November 2014

Increasingly-large datasets (for example, the resting-state fMRI data from the Human Connectome Project) are demanding analyses that are problematic because of the sheer scale of the aggregate data. We present two approaches for applying group-level PCA; both give a close approximation to the output of PCA applied to full concatenation of all individual datasets, while having very low memory requirements regardless of the number of datasets being combined. Across a range of realistic simulations, we find that in most situations, both methods are more accurate than current popular approaches for analysis of multi-subject resting-state fMRI studies. The group-PCA output can be used to feed into a range of further analyses that are then rendered practical, such as the estimation of group-averaged voxelwise connectivity, group-level parcellation, and group-ICA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289914PMC
http://dx.doi.org/10.1016/j.neuroimage.2014.07.051DOI Listing

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