A non-fluorescent quencher based on thiazole orange was incorporated into oligonucleotides. Fluorimetry and fluorogenic real-time polymerase chain reaction experiments demonstrated that the quencher is effective for fluorescein amidite dyes. The thiazole orange quencher also increased the melting temperature of DNA duplexes, which may facilitate the design of shorter and more discriminatory probes. The effectiveness of the quencher in TaqMan probes was also demonstrated.
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http://dx.doi.org/10.1016/j.bmcl.2014.06.036 | DOI Listing |
Se Pu
January 2025
State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
17-Estradiol (E2) is a natural steroidal estrogen essential for a variety of physiological functions in organisms. However, external E2, which is renowned for its potent biological effects, is also considered to be an endocrine-disrupting compound (EDC) capable of disturbing the normal operation of the endocrine system, even at nanogram-per-liter (ng/L) concentrations. Studies have revealed that medical and livestock wastewater can be contaminated with E2, which poses potential risks to human health.
View Article and Find Full Text PDFACS Omega
December 2024
Experiment Research Center, Capital Institute of Pediatrics, Beijing 100020, PR China.
Invasive meningococcal disease, caused by (), is a critical global health issue, necessitating swift and precise diagnostics for effective management and control. Here, we introduce a novel diagnostic assay, NM-RT-MCDA, that combines multiple cross displacement amplification (MCDA) with real-time fluorescence detection, targeting a specific gene region in the genome. The assay utilizes a primer set designed for high specificity and incorporates a fluorophore-quencher pair with a restriction endonuclease site for real-time monitoring.
View Article and Find Full Text PDFAnal Chem
December 2024
College of Food Science and Engineering, Northwest A&F University, Yangling, Shaanxi 712100, China.
According to the fluorescence internal filtering effect (IFE), the more the absorption spectrum of the quencher overlaps with the excitation and emission spectra of the fluorescent substance, the better the quenching effect and, correspondingly, the more significant and sensitive the contrast becomes when the fluorescence is turned on. Thus, in the competitive fluorescence-quenching lateral flow immunoassays (FQ-LFIAs), the fluorescence quencher with an outstanding optical property is of great importance. Herein, gold nanoparticles (AuNPs) and polydopamine (PDA) coengineered covalent organic frameworks (COF/Au@PDA) were synthesized as a fluorescence quencher to increase spectral overlap.
View Article and Find Full Text PDFSmall
December 2024
Department of Chemical & Biomolecular Engineering, University of Notre Dame, Notre Dame, IN, 46556, USA.
Synthetic opioids, especially fentanyl and its analogs, have created an epidemic of abuse and significantly increased overdose deaths in the United States. Current detection methods have drawbacks in their sensitivity, scalability, and portability that limit field-based application to promote public health and safety. The need to detect trace amounts of fentanyl in complex mixtures with other drugs or interferents, and the continued emergence of new fentanyl analogs, further complicates detection.
View Article and Find Full Text PDFJ Fluoresc
December 2024
Department of Physics, Dibrugarh University, Dibrugarh, 786004, Assam, India.
Sol-gel silica matrices singly doped with Sm and co-doped with ligands phenyl phosphinic acid (PPIA) and trioctylphosphine oxide (TOPO) were fabricated and studied for their structural and spectroscopic behaviour. Structural studies were done by x-ray diffraction (XRD) and Fourier transform infra-red (FTIR) absorption analysis whereas spectroscopic behaviour was studied by ultraviolet - visible (UV-Vis) absorption, photoluminescence (PL) excitation, emission and time-correlated decay analyses. XRD studies exhibit the amorphous nature of the samples and FTIR studies corroborate the presence of the ligands in the silica matrix.
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