Many of the most interesting questions in organismal biology, especially those involving the functional and adaptive significance of organismal characteristics, intrinsically transcend levels of biological organization. These organismal functions typically involve multiple interacting biological mechanisms. We suggest that subdisciplinary advances have led both to the opportunity and to the necessity to reintegrate knowledge into a new understanding of the whole organism. We present a conceptual framework for a modeling approach that addresses the functioning of organisms in an integrative way, incorporating elements from environments, populations, individuals, and intra-organismal dynamics such as physiology and behavior. To give substance to our conceptual framework, we provide a preliminary focal case study using phenotypic plasticity in the tooth morphology of snails in the genus Lacuna. We use this case study to illustrate ways in which questions about the evolution and ecology of organismal function intrinsically span all organizational levels. In this case, and in many others, quantitative approaches that integrate across mechanisms and scales can suggest new hypotheses about organismal function, and provide new tools to test those hypotheses. Integrative quantitative models also provide roadmaps for the large-scale collaborations among diverse disciplinary specialists that are needed to gain deeper insights into organismal function.
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http://dx.doi.org/10.1093/icb/icu045 | DOI Listing |
J Exp Biol
January 2025
Department of Biology, San Francisco State University, San Francisco, CA 94132, USA.
One notable consequence of climate change is an increase in the frequency, scale and severity of heat waves. Heat waves in terrestrial habitats (atmospheric heat waves, AHW) and marine habitats (marine heat waves, MHW) have received considerable attention as environmental forces that impact organisms, populations and whole ecosystems. Only one ecosystem, the intertidal zone, experiences both MHWs and AHWs.
View Article and Find Full Text PDFDevelopment
January 2025
Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA 02138, USA.
Developmental biologists can perform studies that describe a phenomenon (descriptive work) and/or explain how the phenomenon works (mechanistic work). There is a prevalent perception that molecular/genetic explanations achieved via perturbations of gene function are the primary means of advancing mechanistic knowledge. We believe this to be a limited perspective, one that does not effectively represent the breadth of work in our field.
View Article and Find Full Text PDFNat Commun
January 2025
Department of Biomedicine, University of Bergen, Bergen, Norway.
N-terminal acetylation is a highly abundant protein modification in eukaryotic cells. This modification is catalysed by N-terminal acetyltransferases acting co- or post-translationally. Here, we review the eukaryotic N-terminal acetylation machinery: the enzymes involved and their substrate specificities.
View Article and Find Full Text PDFPhysiol Rev
January 2025
Pittsburgh Heart, Lung, Blood and Vascular Medicine Institute, University of Pittsburgh, Pittsburgh, PA, 15261.
The redox signaling network in mammals has garnered enormous interest and taken on major biological significance in recent years as the scope of NADPH oxidases (NOXs) as regulators of physiological signaling and cellular degeneration has grown exponentially. All NOX subtypes have in common the capacity to generate reactive oxygen species (ROS) superoxide anion (O) and/or hydrogen peroxide (HO). A baseline, normal level of ROS formation supports a wide range of processes under physiological conditions.
View Article and Find Full Text PDFCell Metab
January 2025
Division of Endocrinology, Metabolism, and Nephrology, Department of Internal Medicine, Keio University School of Medicine, Tokyo, Japan; Center for Preventive Medicine, Keio University, Tokyo, Japan. Electronic address:
Tissue-level oscillation is achieved by tissue-intrinsic clocks along with network-dependent signals originating from distal organs and organismal behavior. Yet, it remains unexplored whether maternal circadian rhythms during pregnancy influence fetal rhythms and impact long-term susceptibility to dietary challenges in offspring. Here, we demonstrate that circadian disruption during pregnancy decreased placental and neonatal weight yet retained transcriptional and structural maturation.
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