Many programs have been designed to view the 3D structures of protein molecules in 2D. However, three types of linked information haven't been previously defined in a systematic way that highlights the interface design challenge. Specifically, a scientist must have sequence, structure, and homology information in working memory to manipulate and understand a protein structure or related protein structures. Categorizing information types enables the application of classical interaction principles to the design of an intuitive interface for both expert and novice users. In a comparative user evaluation, their Molli system enhances the exploratory process of manipulating proteins of varying complexity by preserving the underlying data's linkages and relations.
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http://dx.doi.org/10.1109/MCG.2012.66 | DOI Listing |
Ecology
January 2025
Department of Biology, Centre for Biodiversity Dynamics (CBD), Norwegian University of Science and Technology (NTNU), Trondheim, Norway.
Species interactions can contribute to species turnover when the outcomes of the interactions are context dependent (e.g., change along environmental gradients).
View Article and Find Full Text PDFAnim Cogn
January 2025
Department of Biology, McGill University, Quebec, Canada.
Social learning, where animals learn from other individuals, occurs in many diverse species. The influential but debated 'costly information' hypothesis posits that animals will rely more on social information in high-risk contexts, such as under increased predation risk. We examined and compared the effects of perceived predation risk on social learning of foraging sites in female Trinidadian guppies from wild and domestic populations raised in common-garden environments.
View Article and Find Full Text PDFScientifica (Cairo)
December 2024
Department of Biochemistry, University of Dschang, Dschang, Cameroon.
bioRxiv
December 2024
Department of Biology, Colorado State University, Fort Collins, CO 80523, USA.
The explosion of next-generation sequencing technologies has allowed researchers to move from studying single genes, to thousands of genes, and thereby to also consider the relationships within gene networks. Like others, we are interested in understanding how developmental and evolutionary forces shape the expression of individual genes, as well as the interactions among genes. To this end, we characterized the effects of genetic background and developmental environment on brain gene coexpression in two parallel, independent evolutionary lineages of Trinidadian guppies ().
View Article and Find Full Text PDFJ Food Sci
December 2024
Facultad de Ciencias Agropecuarias, Laboratorio de Tecnología de Alimentos (LabTA), Universidad Nacional de Córdoba, Córdoba, Argentina.
The use of antioxidants is known to reduce lipid oxidation. This study aimed to assess the interaction of two antioxidant mechanisms, namely, "chain-breaking" and "termination-enhancing" by combining natural antioxidants derived from "oregano" (Origanum vulgare L.) and "peperina" (Minthostachys mollis K.
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