The reactions of CO2 with anionic water clusters containing hydroxide, OH(-)(H2O)n, and hydroperoxide, HO2(-)(H2O)n, have been studied in the isolated state using a mass spectrometric technique. The OH(-)(H2O)n clusters were found to react faster for n = 2,3, while for n >3 the HO2(-)(H2O)n clusters are more reactive. Insights from quantum chemical calculations revealed a common mechanism in which the decisive bicarbonate-forming step starts from a pre-reaction complex where OH(-) and CO2 are separated by one water molecule. Proton transfer from the water molecule to OH(-) then effectively moves the hydroxide ion motif next to the CO2 molecule. A new covalent bond is formed between CO2 and the emerging OH(-) in concert with the proton transfer. For larger clusters, successive proton transfers from H2O molecules to neighbouring OH(-) are required to effectively bring about the formation of the pre-reaction complex, upon which bicarbonate formation is accomplished according to the concerted mechanism. In this manner, a general mechanism is suggested, also applicable to bulk water and thereby to CO2 uptake in oceans. Furthermore, this mechanism avoids the intermediate H2CO3 by combining the CO2 hydrolysis step and the protolysis step into one. The general mechanistic picture is consistent with low enthalpy barriers and that the limiting factors are largely of entropic nature.
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http://dx.doi.org/10.1039/c4cp00100a | DOI Listing |
Environ Sci Process Impacts
December 2024
Department of Chemistry, University of California Irvine, CA 92697, USA.
Biotechnol Bioeng
January 2025
The National and Local Joint Engineering Research Center for Biomanufacturing of Chiral Chemicals, Zhejiang University of Technology, Hangzhou, Zhejiang, P. R. China.
Front Chem
September 2024
Warshel Institute for Computational Biology, School of Medicine, The Chinese University of Hong Kong, Shenzhen, China.
Previous theoretical studies have revealed that high-spin states possess flatter potential energy surfaces than low-spin states in reactions involving iron(IV)-oxo species of cytochrome P450 enzymes (P450s), nonheme enzymes, or biomimetic complexes. Therefore, actively utilizing high-spin states to enhance challenging chemical transformations, such as C-H bond activation, represents an intriguing research avenue. However, the inherent instability of high-spin states relative to low-spin states in pre-reaction complexes often hinders their accessibility around the transition state, especially in heme systems with strong ligand fields.
View Article and Find Full Text PDFNature
July 2024
Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.
Ubiquitination pathways have crucial roles in protein homeostasis, signalling and innate immunity. In these pathways, an enzymatic cascade of E1, E2 and E3 proteins conjugates ubiquitin or a ubiquitin-like protein (Ubl) to target-protein lysine residues. Bacteria encode ancient relatives of E1 and Ubl proteins involved in sulfur metabolism, but these proteins do not mediate Ubl-target conjugation, leaving open the question of whether bacteria can perform ubiquitination-like protein conjugation.
View Article and Find Full Text PDFChemphyschem
November 2024
National Insitute of Science Education and Research (NISER) Bhubaneswar, An OCC of Homi Bhabha National Institute, P. O. Jatni, Khurdha, Odisha, 752050, India.
The atomic-level mechanisms of the nucleophilic substitution reactions at the nitrogen center (S2@N) were investigated for the reactions of chloramine (NHCl) with the alkoxide ions (RO, where R=H, CH, and CH) using DFT and MP2 methods. The computed potential energy profiles for the S2@N pathways involving the back-side attack of the nucleophiles show the typical double-well potential with submerged barriers similar to the S2 reactions at the carbon center (S2@C). However, the pre-reaction and post-reaction complexes are, respectively, the N-H⋅⋅⋅O and N-H⋅⋅⋅Cl hydrogen-bonded intermediates, which are different from those generally seen in S2@C reactions.
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